Factsheet for GSMUA_Achr5P29740_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	80.38	80.6
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	79.56	79.78
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	69.21	77.44
GSMUA_Achr2P22970_001	Banana	mitochondrion	73.57	75.0
GSMUA_Achr10P...	Banana	mitochondrion	71.12	71.9
GSMUA_Achr6P08990_001	Banana	mitochondrion	65.12	70.09
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	49.86	58.47
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	49.05	54.88
GSMUA_Achr11P...	Banana	mitochondrion	53.68	54.72
GSMUA_Achr10P...	Banana	cytosol	47.96	54.32
GSMUA_Achr3P22530_001	Banana	cytosol	45.5	53.7
GSMUA_Achr6P08170_001	Banana	cytosol	52.86	52.72
GSMUA_Achr6P08180_001	Banana	cytosol	53.68	49.25
GSMUA_Achr10P...	Banana	mitochondrion	44.96	48.1
VIT_16s0022g01020.t01	Wine grape	cytosol	39.78	47.4
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	48.77	31.24
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	34.6	16.89

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016747	EnsemblPlantsGene:GSMUA_Achr5G29740_001	EnsemblPlants:GSMUA_Achr5P29740_001
EnsemblPlants:GSMUA_Achr5T29740_001	InterPro:IPR016039	UniProt:M0T2U8	PFAM:PF00195	PIRSF:PIRSF000451	PANTHER:PTHR11877
PANTHER:PTHR11877:SF27	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000294CD89	SEG:seg

Description

Chalcone synthase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29740_001]

Coordinates

chr5:-:29369727..29371018

Molecular Weight (calculated)

41278.2 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.148

Length

367 amino acids

Sequence
(BLAST)

001: MAAIHASRKT TRSEGPATIM AIGTANPPNL YEQSSYADFY FRVTNSEHMQ ELKQKFQRIC DRTMIKRRYM LLTEEILREK PGMCSYMGTS FDERQDIVVE
101: EVPRLAKEAA AKAIKEWGRD KSEITHLLFC STSGIDMPGA DYRLIKLLGL PLTVNRIMLY SQACHMGAQM LRIAKDIAEN NRDARVLLVA CEVNTLIFRG
201: PDERDIQSLA GQPIFEIMSA AEVTVPESDM AVGGQLKQVG LTFHFMRQLP MLIANNLENC LQEAFKPLGI TDWNEVFWVS HPGNWGIMDA IEAKLALQKG
301: KLRSSRHVFS EYGNMMGATV LFVMDDVRKR STVEERTTTG DGLEWGFLCA FGPGLSIETL VLHSVPL

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.