Factsheet for GSMUA_Achr6P08990_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	87.98	82.64
GSMUA_Achr2P22970_001	Banana	mitochondrion	87.1	82.5
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	66.86	69.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	74.49	69.4
GSMUA_Achr10P...	Banana	mitochondrion	74.19	69.13
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	70.09	65.12
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	52.2	56.87
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	53.96	56.1
GSMUA_Achr10P...	Banana	cytosol	52.79	55.56
GSMUA_Achr11P...	Banana	mitochondrion	56.89	53.89
GSMUA_Achr6P08170_001	Banana	cytosol	57.77	53.53
GSMUA_Achr3P22530_001	Banana	cytosol	48.68	53.38
GSMUA_Achr10P...	Banana	mitochondrion	51.32	51.02
GSMUA_Achr6P08180_001	Banana	cytosol	57.77	49.25
VIT_16s0022g01020.t01	Wine grape	cytosol	42.82	47.4
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	56.6	33.68
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	37.54	17.02

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr6G08990_001	EnsemblPlants:GSMUA_Achr6P08990_001	EnsemblPlants:GSMUA_Achr6T08990_001	InterPro:IPR016039	UniProt:M0T5E8	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI000296BD43	SEG:seg	:	:	:

Description

Chalcone synthase J [Source:GMGC_GENE;Acc:GSMUA_Achr6G08990_001]

Coordinates

chr6:-:5974095..5975439

Molecular Weight (calculated)

38024.7 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.170

Length

341 amino acids

Sequence
(BLAST)

001: MGSFHAIRKA QRAQGPATIM AIGTANPPNL YEQSTYPDYY FRVTNSEQKQ DLKHKFRRIC EKTMVKRRYL HLTEAILKER PKLCSYMEPS FDARQEIVVE
101: EVPKLAKEAA AKAINEWGRP NSDITHLVFC SISGIDMPGA DYRLAKLLGL PLSDIAENNR GARVLVVSCE ITVLSFRGPD EHDFQALAGQ AGFGDGAAAV
201: ISEKAVGGHL REVGLTFHFF NQLPMIIADN IDKSLSEAFE PLGITDWNDI FWVAHPGNWS IMDAIEVKLE LQQEKLSTAR HVFAEYGNMQ SATVYFVMDE
301: VRKRSVREGR ATTGYGLELG VLFGFGPGLT IETVVLRSVP L

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.