Factsheet for GSMUA_Achr10P12200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P02770_001
GSMUA_Achr3P07030_001
GSMUA_Achr4P16830_001
GSMUA_Achr4P24540_001
GSMUA_Achr7P16780_001
GSMUA_Achr8P23330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	GSMUA_Achr2P02770_001	AT3G51240.1	10536025
AT5G13930.1	GSMUA_Achr7P16780_001	AT3G51240.1	10536025
AT5G13930.1	GSMUA_Achr4P16830_001	AT3G55120.1	10536025
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr4P24540_001	AT5G42800.1	10536025
AT5G13930.1	GSMUA_Achr4P24540_001	AT5G42800.1	21669202
AT5G13930.1	GSMUA_Achr10P...	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	88.27	87.2
GSMUA_Achr10P...	Banana	mitochondrion	89.51	84.55
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	80.86	83.71
VIT_14s0068g00920.t01	Wine grape	cytosol	85.8	70.74
VIT_14s0068g00930.t01	Wine grape	cytosol	83.95	69.21
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	84.57	68.84
EES08604	Sorghum	cytosol	85.19	68.83
EES09858	Sorghum	cytosol	85.19	68.83
EES09859	Sorghum	cytosol	85.19	68.83
EES09860	Sorghum	cytosol	85.19	68.83
KXG29016	Sorghum	cytosol	85.19	68.83
KRH27737	Soybean	cytosol	82.41	68.64
KRH77699	Soybean	endoplasmic reticulum	82.41	68.64
PGSC0003DMT400076178	Potato	cytosol	82.41	68.64
Solyc09g091510.2.1	Tomato	cytosol, extracellular	82.41	68.64
EES09865	Sorghum	cytosol	84.88	68.58
KRH58872	Soybean	cytosol	82.1	68.56
Zm00001d052673_P001	Maize	cytosol	84.57	68.5
EES09862	Sorghum	cytosol	84.57	68.33
EES09863	Sorghum	cytosol	84.57	68.33
KRH42757	Soybean	cytosol	81.79	68.3
KRH42758	Soybean	cytosol	81.79	68.3
KRH42759	Soybean	cytosol	81.79	68.3
KRH42775	Soybean	cytosol	81.79	68.3
KRH42783	Soybean	cytosol	81.79	68.3
EES09864	Sorghum	cytosol	84.26	68.25
VIT_05s0136g00260.t01	Wine grape	cytosol	81.79	68.12
TraesCS2B01G558400.1	Wheat	cytosol	83.64	68.09
KRH42778	Soybean	cytosol	81.48	68.04
KRH42780	Soybean	cytosol	81.48	68.04
KRH75544	Soybean	cytosol	81.48	68.04
CDX78547	Canola	cytosol	82.72	68.02
TraesCS2A01G025500.1	Wheat	cytosol	82.72	68.02
TraesCS2A01G035300.1	Wheat	cytosol	82.72	68.02
TraesCS2D01G027700.1	Wheat	cytosol	82.72	68.02
AT5G13930.1	Thale cress	cytosol	82.72	67.85
CDX69618	Canola	cytosol	82.72	67.85
HORVU2Hr1G116390.2	Barley	cytosol	83.33	67.84
TraesCS2A01G527700.2	Wheat	cytosol	83.33	67.84
KRH37579	Soybean	cytosol	81.17	67.78
KRH42760	Soybean	cytosol	81.17	67.78
KRH71115	Soybean	cytosol	81.17	67.78
TraesCS2D01G027800.1	Wheat	cytosol	44.14	67.77
TraesCS2A01G025600.1	Wheat	cytosol	82.41	67.77
CDX70528	Canola	cytosol	82.72	67.68
TraesCS2A01G025700.1	Wheat	cytosol, golgi	82.1	67.51
TraesCS2B01G038700.1	Wheat	cytosol	82.1	67.51
Bra008792.1-P	Field mustard	cytosol	82.1	67.34
CDY09836	Canola	cytosol	82.1	67.34
HORVU2Hr1G005220.3	Barley	cytosol	82.1	67.34
Zm00001d007403_P001	Maize	cytosol	83.33	67.33
TraesCS2B01G048400.1	Wheat	cytosol	81.79	67.26
TraesCS2D01G027900.2	Wheat	cytosol	81.79	67.26
Bra006224.1-P	Field mustard	cytosol	82.1	67.17
CDX91090	Canola	cytosol	82.1	67.17
TraesCS2D01G034500.1	Wheat	cytosol	81.79	67.09
KRG94730	Soybean	cytosol	80.56	66.75
Bra023441.1-P	Field mustard	cytosol	81.17	66.75
TraesCS2B01G613100.1	Wheat	cytosol	81.79	66.42
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	79.63	66.32
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	79.63	66.32
Bra020688.1-P	Field mustard	cytosol	79.94	65.74
CDY05664	Canola	cytosol	79.63	65.48
CDY51056	Canola	cytosol	79.63	65.48
TraesCS5D01G488600.1	Wheat	cytosol	79.63	65.32
TraesCS5D01G488700.1	Wheat	cytosol	79.63	65.32
TraesCS2B01G038600.1	Wheat	cytosol	72.53	64.92
Bra036307.1-P	Field mustard	cytosol	78.4	64.63
GSMUA_Achr6P08170_001	Banana	cytosol	72.84	64.13
EES14634	Sorghum	cytosol	78.09	63.57
TraesCS1A01G032100.1	Wheat	cytosol	77.16	63.29
TraesCS1B01G041000.1	Wheat	cytosol	77.16	63.29
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	76.85	63.04
TraesCS1B01G040500.1	Wheat	cytosol	77.16	62.66
PGSC0003DMT400076179	Potato	cytosol	73.15	62.53
TraesCS1A01G032300.1	Wheat	cytosol	76.54	62.31
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	75.93	62.28
TraesCS1B01G040100.1	Wheat	cytosol	75.93	62.28
TraesCS1D01G033800.1	Wheat	cytosol	76.23	62.06
TraesCS1D01G033600.1	Wheat	cytosol	76.23	61.9
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	76.54	61.69
HORVU2Hr1G004170.4	Barley	plastid	82.1	61.43
CDY07114	Canola	cytosol	77.47	61.22
HORVU1Hr1G004830.1	Barley	cytosol	75.0	61.21
KRH42776	Soybean	cytosol	47.84	60.78
Os07t0214900-00	Rice	cytosol	75.31	60.55
HORVU1Hr1G089540.1	Barley	mitochondrion	74.07	60.15
GSMUA_Achr6P08180_001	Banana	cytosol	73.77	59.75
TraesCS2D01G530600.1	Wheat	cytosol, plastid	83.33	56.49
GSMUA_Achr2P22970_001	Banana	mitochondrion	59.26	53.33
CDY05666	Canola	mitochondrion	68.21	52.87
GSMUA_Achr6P08990_001	Banana	mitochondrion	55.56	52.79
GSMUA_Achr11P...	Banana	mitochondrion	58.33	52.5
GSMUA_Achr10P...	Banana	mitochondrion	58.33	52.07
GSMUA_Achr10P...	Banana	mitochondrion	58.02	51.37
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	51.54	50.91
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	57.41	50.82
GSMUA_Achr3P22530_001	Banana	cytosol	47.22	49.2
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	54.32	47.96
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	59.57	33.68
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	40.12	17.29

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr10G12200_001	EnsemblPlants:GSMUA_Achr10P12200_001	EnsemblPlants:GSMUA_Achr10T12200_001	InterPro:IPR016039	UniProt:M0RHJ6	PFAM:PF00195
PFAM:PF02797	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI00029507AF	SEG:seg	:	:	:	:

Description

Chalcone synthase [Source:GMGC_GENE;Acc:GSMUA_Achr10G12200_001]

Coordinates

chr10:-:21295534..21297266

Molecular Weight (calculated)

35410.9 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.094

Length

324 amino acids

Sequence
(BLAST)

001: MAKLAEIRQS QRAEGSATVL AIGTATPVNV LYQADYPDYY FRITKSEHLT ELKEKFKRMC DKSMIRKRYM HINEEILKEN PNVCAYMAPS LDARQDIVVV
101: EVPKLGKEAA VKAIKEWGQP KSKITHLVFC TTSGQGCFAG GTVLRMAKDL AENNRGARVL VVCSEITAVT FRGPSESHLD SLVGQALFGD GAAAIIVGAD
201: PDPATEKPIF QLRSLAEAFK PLGISDWNSI FWIAHPGGPA ILDQVEAKLG LEKEKMKATR EVLKEYGNMS SACVLFILDE MRKRSAEDGK ATTGEGLEWG
301: VLFGFGPGLT VETVVLHSIP IAAH

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.