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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003209.1-P
Bra007142.1-P
Bra007145.1-P
Bra009358.1-P
Bra012862.1-P
Bra014831.1-P
Bra017728.1-P
Bra027457.1-P
Bra036828.1-P
Bra038648.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13930.1 Bra012862.1-P AT3G51240.1 10536025
AT5G13930.1 Bra014831.1-P AT3G51240.1 10536025
AT5G13930.1 Bra036828.1-P AT3G51240.1 10536025
AT5G13930.1 Bra003209.1-P AT3G55120.1 10536025
AT5G13930.1 Bra007142.1-P AT3G55120.1 10536025
AT5G13930.1 Bra007145.1-P AT3G55120.1 10536025
AT5G13930.1 Bra017728.1-P AT3G55120.1 10536025
AT5G13930.1 Bra009358.1-P AT5G08640.1 18467451
AT5G13930.1 Bra009358.1-P AT5G08640.1 21669202
AT5G13930.1 Bra027457.1-P AT5G42800.1 10536025
AT5G13930.1 Bra027457.1-P AT5G42800.1 21669202
AT5G13930.1 Bra038648.1-P AT5G63590.1 18467451
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70528 Canola cytosol 99.24 99.24
CDX78547 Canola cytosol 98.74 99.24
Bra008792.1-P Field mustard cytosol 95.71 95.95
AT5G13930.1 Thale cress cytosol 94.44 94.68
Bra023441.1-P Field mustard cytosol 93.94 94.42
Bra036307.1-P Field mustard cytosol 90.15 90.84
Bra020688.1-P Field mustard cytosol 87.12 87.56
KRH42776 Soybean cytosol 55.56 86.27
KRG94730 Soybean cytosol 84.6 85.68
VIT_14s0068g00920.t01 Wine grape cytosol 84.85 85.5
GSMUA_Achr6P16370_001 Banana cytosol, mitochondrion, plastid 67.42 85.3
VIT_05s0136g00260.t01 Wine grape cytosol 83.59 85.09
VIT_14s0068g00930.t01 Wine grape cytosol 84.34 84.99
PGSC0003DMT400049165 Potato cytosol, mitochondrion 83.33 84.83
Solyc05g053550.2.1 Tomato cytosol, mitochondrion 83.33 84.83
Solyc09g091510.2.1 Tomato cytosol, extracellular 83.33 84.83
PGSC0003DMT400076178 Potato cytosol 83.33 84.83
GSMUA_Achr6P10910_001 Banana cytosol, mitochondrion 69.7 84.15
KRH42758 Soybean cytosol 82.07 83.76
KRH42759 Soybean cytosol 82.07 83.76
KRH58872 Soybean cytosol 82.07 83.76
KRH42783 Soybean cytosol 82.07 83.76
KRH42780 Soybean cytosol 82.07 83.76
KRH42778 Soybean cytosol 82.07 83.76
KRH42775 Soybean cytosol 82.07 83.76
KRH27737 Soybean cytosol 82.07 83.55
KRH77699 Soybean endoplasmic reticulum 82.07 83.55
KRH42757 Soybean cytosol 81.82 83.51
KRH75544 Soybean cytosol 81.82 83.51
KRH42760 Soybean cytosol 81.57 83.25
KRH71115 Soybean cytosol 81.57 83.25
KRH37579 Soybean cytosol 81.57 83.25
EES09858 Sorghum cytosol 83.59 82.54
EES09864 Sorghum cytosol 83.08 82.25
GSMUA_Achr10P... Banana cytosol 67.17 82.1
EES09865 Sorghum cytosol 83.08 82.04
TraesCS2A01G035300.1 Wheat cytosol 81.57 81.98
TraesCS2B01G558400.1 Wheat cytosol 82.32 81.91
EES09860 Sorghum cytosol 82.83 81.8
EES08604 Sorghum cytosol 82.83 81.8
EES09859 Sorghum cytosol 82.83 81.8
EES09863 Sorghum cytosol 82.83 81.8
KXG29016 Sorghum cytosol 82.83 81.8
TraesCS2A01G025600.1 Wheat cytosol 81.31 81.73
TraesCS2D01G027900.2 Wheat cytosol 81.31 81.73
TraesCS2B01G038700.1 Wheat cytosol 81.31 81.73
TraesCS2D01G027700.1 Wheat cytosol 81.31 81.73
TraesCS2A01G025700.1 Wheat cytosol, golgi 81.31 81.73
TraesCS2A01G527700.2 Wheat cytosol 82.07 81.66
HORVU2Hr1G005220.3 Barley cytosol 81.31 81.52
Zm00001d052673_P001 Maize cytosol 82.32 81.5
HORVU2Hr1G116390.2 Barley cytosol 81.82 81.41
TraesCS2D01G034500.1 Wheat cytosol 81.06 81.27
TraesCS2A01G025500.1 Wheat cytosol 80.81 81.22
TraesCS2B01G048400.1 Wheat cytosol 80.81 81.22
EES09862 Sorghum cytosol 82.07 81.05
Zm00001d007403_P001 Maize cytosol 81.82 80.8
Os11t0530600-01 Rice cytosol, mitochondrion, plasma membrane 80.81 80.4
TraesCS2D01G027800.1 Wheat cytosol 42.42 79.62
TraesCS2B01G038600.1 Wheat cytosol 72.22 79.01
TraesCS2B01G613100.1 Wheat cytosol 79.55 78.95
PGSC0003DMT400076179 Potato cytosol 73.74 77.04
TraesCS5D01G488600.1 Wheat cytosol 76.77 76.96
TraesCS5D01G488700.1 Wheat cytosol 76.77 76.96
TraesCS1B01G041000.1 Wheat cytosol 76.52 76.71
TraesCS1B01G040300.1 Wheat cytosol, mitochondrion 76.01 76.2
TraesCS1B01G040000.1 Wheat cytosol, mitochondrion 75.76 75.95
TraesCS1A01G032100.1 Wheat cytosol 75.25 75.44
TraesCS1B01G040100.1 Wheat cytosol 75.25 75.44
TraesCS1A01G032300.1 Wheat cytosol 75.51 75.13
TraesCS1B01G040200.1 Wheat cytosol, mitochondrion 76.26 75.12
TraesCS1D01G033600.1 Wheat cytosol 75.51 74.94
TraesCS1D01G033800.1 Wheat cytosol 75.25 74.87
TraesCS1B01G040500.1 Wheat cytosol 75.25 74.69
HORVU2Hr1G004170.4 Barley plastid 81.57 74.6
EES14634 Sorghum cytosol 74.75 74.37
HORVU1Hr1G004830.1 Barley cytosol 74.24 74.06
HORVU1Hr1G089540.1 Barley mitochondrion 74.49 73.93
GSMUA_Achr10P... Banana mitochondrion 62.63 72.3
Os07t0214900-00 Rice cytosol 70.96 69.73
TraesCS2D01G530600.1 Wheat cytosol, plastid 82.07 67.99
Bra034658.1-P Field mustard cytosol 38.89 39.29
Bra017681.1-P Field mustard cytosol 38.64 39.03
Bra011566.1-P Field mustard cytosol 38.64 39.03
Bra000559.1-P Field mustard mitochondrion 38.13 38.52
Bra017147.1-P Field mustard cytosol, peroxisome, plastid 38.38 17.0
Protein Annotations
KEGG:00941+2.3.1.74Gene3D:3.40.47.10MapMan:9.2.2.1.1.1EnsemblPlantsGene:Bra006224EnsemblPlants:Bra006224.1EnsemblPlants:Bra006224.1-P
InterPro:Chalcone/stilbene_synth_CInterPro:Chalcone/stilbene_synthase_ASInterPro:Chalcone/stilbene_synthase_NGO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0016740GO:GO:0016746GO:GO:0016747InterPro:IPR016039
UniProt:M4CPT5PFAM:PF00195PFAM:PF02797PIRSF:PIRSF000451ScanProsite:PS00441PANTHER:PTHR11877
PANTHER:PTHR11877:SF43InterPro:Polyketide_synthase_type-IIISUPFAM:SSF53901InterPro:Thiolase-likeUniParc:UPI000253FAD0:
Description
AT5G13930 (E=2e-216) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase
Coordinates
chrA03:+:2596137..2597594
Molecular Weight (calculated)
43242.5 Da
IEP (calculated)
7.050
GRAVY (calculated)
-0.099
Length
396 amino acids
Sequence
(BLAST)
001: MVMSRPSSSL DEIRKAQRAD GPAGILAIGT ANPANHVIQA EYPDYYFRIT NSEHMTDLKE KFKRMCDKSM IRKRHMHLTE EFLKENPNMC AYMAPSLDVR
101: QDIVVVEVPK LGKEAAVKAI KEWGQPKSKI THVAFCTTSG VDMPGADYQI TKLLGLRPSV KRLMMYQRGC FAGGTVLRLA KDLAENNRGA RVLVVCSEIT
201: AVTFRGPSDT HLDSLVGQAL FSDGAAALIV GSDPDASVGE KPIFEMVSAA QTILPDSDGA IDGHLREVGL TFHLLKDVPG LISKNIEKSL EEAFKPLGIS
301: DWNSLFWIAH PGGPAILDEV EKKLGLKAEK MRATRQVLSE YGNMSSACVL FILDEMRRKS AKDGVATTGE GLEWGVLFGF GPGLTVETVV LHSVPV
Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
Arabidopsis Description
CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.