Factsheet for Bra000559.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21499	Canola	mitochondrion	99.49	99.49
CDX83215	Canola	mitochondrion	98.98	98.98
AT4G00040.1	Thale cress	cytosol, mitochondrion	89.03	90.65
VIT_15s0021g02170.t01	Wine grape	cytosol	73.72	74.29
KRH75257	Soybean	cytosol	72.7	73.45
PGSC0003DMT400095725	Potato	plastid	70.66	69.95
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	60.46	66.2
Bra011566.1-P	Field mustard	cytosol	61.99	61.99
Bra017681.1-P	Field mustard	cytosol	61.48	61.48
Bra034658.1-P	Field mustard	cytosol	61.22	61.22
Zm00001d032662_P001	Maize	plastid	59.69	60.0
TraesCS1D01G157500.1	Wheat	cytosol	59.44	59.74
TraesCS1A01G160300.1	Wheat	cytosol	58.93	59.23
TraesCS1B01G176300.1	Wheat	cytosol	58.93	59.23
Os10t0484800-01	Rice	cytosol	58.42	58.87
Zm00001d013991_P001	Maize	mitochondrion	58.16	54.16
HORVU1Hr1G042510.2	Barley	cytosol	58.42	47.12
EER91459	Sorghum	cytosol	57.91	46.8
Bra020688.1-P	Field mustard	cytosol	41.33	41.12
Bra008792.1-P	Field mustard	cytosol	39.03	38.73
Bra006224.1-P	Field mustard	cytosol	38.52	38.13
Bra036307.1-P	Field mustard	cytosol	37.76	37.66
Bra023441.1-P	Field mustard	cytosol	37.76	37.56
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	79.59	34.9

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	EnsemblPlantsGene:Bra000559	EnsemblPlants:Bra000559.1	EnsemblPlants:Bra000559.1-P	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M4C8N1	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI000254011D	SEG:seg	:	:	:

Description

AT4G00040 (E=2e-167) | chalcone and stilbene synthase family protein

Coordinates

chrA03:+:11771128..11772419

Molecular Weight (calculated)

42933.7 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.204

Length

392 amino acids

Sequence
(BLAST)

001: MLATGRVAKQ KEIAQSTRRV ANQGKATVLA LGKAFPSNVV SQENLVEEYL REIKCDDPSI KEKLQHLCKT TTVKTRYTVM SSETMQKYPE LATEGSPTIK
101: QRLEIANEAV VQMAYEASLA CIKEWGRGVE DITHLVYVSS SEFRLPGGDL YLSAQLGLSN EVQRVMFYFL GCYGGVSGMR VAKDIAENNP GSRVLLTTSE
201: TMVLGFRPPN KARPYDLVGA ALFGDGAAAL IIGADPTESE SPFMELHYAL QQFLPGTQGV IDGRLSEEGI SFKLGRELPQ KIEDNIEEFC KKLVAKAGSG
301: SLELNDLFWA VHPGGPAILN GLETKLKLKP EKLECSRQAL VDYGNASSNT IFYIMDKVRG ELEKKGRGGE EWGLGLAFGP GITFEGFLMR SL

Best Arabidopsis Sequence Match ( AT4G00040.1 )
(BLAST)

001: MLVSARVEKQ KRVAYQGKAT VLALGKALPS NVVSQENLVE EYLREIKCDN LSIKDKLQHL CKSTTVKTRY TVMSRETLHK YPELATEGSP TIKQRLEIAN
101: DAVVQMAYEA SLVCIKEWGR AVEDITHLVY VSSSEFRLPG GDLYLSAQLG LSNEVQRVML YFLGCYGGLS GLRVAKDIAE NNPGSRVLLT TSETTVLGFR
201: PPNKARPYNL VGAALFGDGA AALIIGADPT ESESPFMELH CAMQQFLPQT QGVIDGRLSE EGITFKLGRD LPQKIEDNVE EFCKKLVAKA GSGALELNDL
301: FWAVHPGGPA ILSGLETKLK LKPEKLECSR RALMDYGNVS SNTIFYIMDK VRDELEKKGT EGEEWGLGLA FGPGITFEGF LMRNL

Arabidopsis Description

Type III polyketide synthase C [Source:UniProtKB/Swiss-Prot;Acc:O81305]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.