Factsheet for AT4G00040.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83215	Canola	mitochondrion	90.91	89.29
Bra000559.1-P	Field mustard	mitochondrion	90.65	89.03
CDY21499	Canola	mitochondrion	90.65	89.03
AT1G02050.1	Thale cress	mitochondrion	78.18	76.2
VIT_15s0021g02170.t01	Wine grape	cytosol	74.03	73.26
KRH75257	Soybean	cytosol	72.99	72.42
PGSC0003DMT400095725	Potato	plastid	71.43	69.44
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	61.56	66.2
AT4G34850.1	Thale cress	cytosol	62.34	61.22
Zm00001d032662_P001	Maize	plastid	60.78	60.0
TraesCS1D01G157500.1	Wheat	cytosol	60.52	59.74
TraesCS1A01G160300.1	Wheat	cytosol	60.0	59.23
TraesCS1B01G176300.1	Wheat	cytosol	60.0	59.23
Os10t0484800-01	Rice	cytosol	59.74	59.13
Zm00001d013991_P001	Maize	mitochondrion	58.96	53.92
HORVU1Hr1G042510.2	Barley	cytosol	59.48	47.12
EER91459	Sorghum	cytosol	58.44	46.39
AT5G13930.1	Thale cress	cytosol	40.26	39.24

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	EntrezGene:828224	ProteinID:AAC19299.1	ProteinID:AEE81817.1	ArrayExpress:AT4G00040
EnsemblPlantsGene:AT4G00040	RefSeq:AT4G00040	TAIR:AT4G00040	RefSeq:AT4G00040-TAIR-G	EnsemblPlants:AT4G00040.1	TAIR:AT4G00040.1
EMBL:AY086158	EMBL:BT001993	EMBL:BT008463	ProteinID:CAB80762.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009813
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	RefSeq:NP_191915.1	UniProt:O81305
PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI00000488C8	SEG:seg	:	:	:	:

Description

Type III polyketide synthase C [Source:UniProtKB/Swiss-Prot;Acc:O81305]

Coordinates

chr4:+:14627..16079

Molecular Weight (calculated)

42417.3 Da

IEP (calculated)

6.093

GRAVY (calculated)

-0.168

Length

385 amino acids

Sequence
(BLAST)

001: MLVSARVEKQ KRVAYQGKAT VLALGKALPS NVVSQENLVE EYLREIKCDN LSIKDKLQHL CKSTTVKTRY TVMSRETLHK YPELATEGSP TIKQRLEIAN
101: DAVVQMAYEA SLVCIKEWGR AVEDITHLVY VSSSEFRLPG GDLYLSAQLG LSNEVQRVML YFLGCYGGLS GLRVAKDIAE NNPGSRVLLT TSETTVLGFR
201: PPNKARPYNL VGAALFGDGA AALIIGADPT ESESPFMELH CAMQQFLPQT QGVIDGRLSE EGITFKLGRD LPQKIEDNVE EFCKKLVAKA GSGALELNDL
301: FWAVHPGGPA ILSGLETKLK LKPEKLECSR RALMDYGNVS SNTIFYIMDK VRDELEKKGT EGEEWGLGLA FGPGITFEGF LMRNL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.