Factsheet for PGSC0003DMT400095725

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 3
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	86.36	95.53
VIT_15s0021g02170.t01	Wine grape	cytosol	79.55	80.98
KRH75257	Soybean	cytosol	78.54	80.15
CDY18415	Canola	cytosol, mitochondrion	75.25	75.83
CDX93339	Canola	mitochondrion	74.75	75.32
AT1G02050.1	Thale cress	mitochondrion	74.49	74.68
AT4G00040.1	Thale cress	cytosol, mitochondrion	69.44	71.43
CDY21499	Canola	mitochondrion	70.2	70.92
Bra000559.1-P	Field mustard	mitochondrion	69.95	70.66
CDX83215	Canola	mitochondrion	69.95	70.66
PGSC0003DMT400004133	Potato	cytosol	61.87	64.47
Os10t0484800-01	Rice	cytosol	60.86	61.95
TraesCS1D01G157500.1	Wheat	cytosol	60.61	61.54
TraesCS1B01G176300.1	Wheat	cytosol	60.61	61.54
TraesCS1A01G160300.1	Wheat	cytosol	60.61	61.54
Zm00001d032662_P001	Maize	plastid	59.34	60.26
Zm00001d013991_P001	Maize	mitochondrion	58.33	54.87
HORVU1Hr1G042510.2	Barley	cytosol	60.35	49.18
EER91459	Sorghum	cytosol	58.84	48.04
PGSC0003DMT400043447	Potato	cytosol	40.4	41.03
PGSC0003DMT400076178	Potato	cytosol	40.15	40.87
PGSC0003DMT400022254	Potato	cytosol	39.9	40.51
PGSC0003DMT400076179	Potato	cytosol	38.64	40.37
PGSC0003DMT400022255	Potato	cytosol	33.08	39.34
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	38.64	39.33
PGSC0003DMT400022258	Potato	cytosol	38.89	39.29
PGSC0003DMT400069814	Potato	cytosol	36.62	36.99
PGSC0003DMT400043464	Potato	cytosol	36.87	36.14
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	75.0	33.22

Protein Annotations

EntrezGene:102588465	MapMan:21.8.1.4	Gene3D:3.40.47.10	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1DWX9	PFAM:PF00195	PFAM:PF02797
EnsemblPlantsGene:PGSC0003DMG400045296	PGSC:PGSC0003DMG400045296	EnsemblPlants:PGSC0003DMT400095725	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0002969E86	RefSeq:XP_006347928.1	:

Description

Anther-specific protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045296]

Coordinates

chr1:-:69817898..69819217

Molecular Weight (calculated)

43815.0 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.258

Length

396 amino acids

Sequence
(BLAST)

001: MSHNNKNVNG ASNHFFQPSR RVPTLGKATI LAMGKALPPQ LVPQDCLVEG YMRDTNCKDL RIKEKLERLC KTTTVKTRYT VMSKEILEKY PELATEGTPT
101: INQRLEIANP AVVEMAKEAS LACIKEWGRT VDEITHIVYV SSSEIRLPGG DLHLSTELGL RSDVGRVMLY FLGCYGGVTG LRVAKDIAEN NPGSRVLLTT
201: SETTILGFRP PNNARPYDLV GAALFGDGAA AVIIGTEPIV GTESPFIELN FAMQQFLPGT KNVIDGRLTD EGINFKLGRD LPEKIQDNIE EFCKKLIAKN
301: DELKGSNYND LFWAVHPGGP AILDRLEKTM KLQNEKLNCS RKALMDFGNV SSNTIFYVME NMREELKNKK DGGEEWGLAL AFGPGITFEG ILLRSL

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.