Factsheet for PGSC0003DMT400069814

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053170.2.1	Tomato	cytosol	96.43	96.43
PGSC0003DMT400076178	Potato	cytosol	69.13	69.67
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	68.37	68.89
PGSC0003DMT400076179	Potato	cytosol	64.8	67.02
PGSC0003DMT400022255	Potato	cytosol	54.34	63.96
PGSC0003DMT400043447	Potato	cytosol	61.73	62.05
PGSC0003DMT400022254	Potato	cytosol	61.48	61.79
PGSC0003DMT400022258	Potato	cytosol	59.44	59.44
PGSC0003DMT400043464	Potato	cytosol	59.18	57.43
KRH18039	Soybean	cytosol	43.88	54.09
PGSC0003DMT400004133	Potato	cytosol	38.78	40.0
PGSC0003DMT400095725	Potato	plastid	36.99	36.62

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:102600279	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS
InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1CL74	PFAM:PF00195
PFAM:PF02797	EnsemblPlantsGene:PGSC0003DMG400027146	PGSC:PGSC0003DMG400027146	EnsemblPlants:PGSC0003DMT400069814	PIRSF:PIRSF000451	ScanProsite:PS00441
PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000296F51C
RefSeq:XP_006355706.1	SEG:seg	:	:	:	:

Description

Chalcone synthase B [Source:PGSC_GENE;Acc:PGSC0003DMG400027146]

Coordinates

chr5:+:48437160..48440351

Molecular Weight (calculated)

43194.7 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.033

Length

392 amino acids

Sequence
(BLAST)

001: MKLENGQKIG RVHERAEGPA KILAIGTATP FHWVDQTSYP DYYFKVTNSE HLVDLKEKFR RICSRTMIRK RHMLLTEEIL KKNPNLCSYN GPSLDIRQDI
101: LVSEIPKLGK EAALMAIDEW AQPKSKITHL VFCTRSGVDM PGADYQLIKL LGLSPSVQRL MMYQQGCFAG GTMLRLAKDL AENNKGARVL VVCAESSAIG
201: FRGPSEAHPD NLIAQALFGD GAVAVIIGSD PKMGLERPIF EIVSAAQTFV PNGDCHLALH LREMGLTFHC TRDVPPTIAK NVESCLIKAF EPLGISDWNS
301: VFWILHPGGN AIVDQVESTL GLEPDKLRAT RNILREYGNL SSACVLFILD EIRKKSARYG LKTTGDGLDL GVLLSFGPGL TIETVVLRSV PI

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.