Factsheet for PGSC0003DMT400004133

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111070.2.1	Tomato	cytosol	98.42	97.65
KRH29108	Soybean	cytosol	83.95	82.43
VIT_03s0038g01460.t01	Wine grape	cytosol	83.42	80.87
CDX75466	Canola	cytosol	81.84	79.34
Bra011566.1-P	Field mustard	cytosol	81.58	79.08
AT4G34850.1	Thale cress	cytosol	81.58	79.08
CDX69091	Canola	cytosol	81.32	78.83
CDY34811	Canola	cytosol	81.05	78.57
Bra017681.1-P	Field mustard	cytosol	80.53	78.06
CDX72506	Canola	cytosol	80.53	78.06
CDY40656	Canola	cytosol	80.53	78.06
Bra034658.1-P	Field mustard	cytosol	80.26	77.81
CDY17490	Canola	cytosol	79.74	77.3
CDY58814	Canola	cytosol	79.74	77.3
KRH24136	Soybean	cytosol	76.05	76.66
Os07t0411300-00	Rice	cytosol	69.47	65.19
EER98407	Sorghum	cytosol	70.79	64.35
Zm00001d019478_P001	Maize	cytosol	69.74	63.55
TraesCS5A01G002900.1	Wheat	cytosol	70.0	63.03
TraesCS5B01G003100.1	Wheat	cytosol	69.21	62.77
TraesCS5D01G003600.1	Wheat	cytosol	68.95	62.23
PGSC0003DMT400095725	Potato	plastid	64.47	61.87
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	69.47	57.77
PGSC0003DMT400076178	Potato	cytosol	45.0	43.96
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	44.74	43.7
PGSC0003DMT400076179	Potato	cytosol	43.16	43.27
PGSC0003DMT400022255	Potato	cytosol	36.58	41.74
PGSC0003DMT400022258	Potato	cytosol	42.37	41.07
PGSC0003DMT400022254	Potato	cytosol	42.11	41.03
PGSC0003DMT400043447	Potato	cytosol	41.84	40.77
PGSC0003DMT400043464	Potato	cytosol	41.58	39.11
PGSC0003DMT400069814	Potato	cytosol	40.0	38.78
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	68.16	34.44

Protein Annotations

EntrezGene:102581805	MapMan:21.8.1.4	Gene3D:3.40.47.10	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0010584	GO:GO:0016043	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0019748
GO:GO:0030639	GO:GO:0080110	GO:GO:0090439	InterPro:IPR016039	UniProt:M0ZMY1	PFAM:PF00195
PFAM:PF02797	EnsemblPlantsGene:PGSC0003DMG400001635	PGSC:PGSC0003DMG400001635	EnsemblPlants:PGSC0003DMT400004133	PIRSF:PIRSF000451	PANTHER:PTHR11877
PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000296EC03	RefSeq:XP_006359643.1

Description

Chalcone synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400001635]

Coordinates

chr1:+:87143395..87145217

Molecular Weight (calculated)

41970.8 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.105

Length

380 amino acids

Sequence
(BLAST)

001: MGRMEGRNEI NFGNATILAL GKAFPHQLVM QEFLVDGYFK NTNCDDPELK QRLTRLCKTT TVKTRYVVMS EEILKKYPEL AVEGLPTVKQ RLDICNAAVT
101: EMAIEASQSC IKKWGRPISD ITHVVYVSSS EARLPGGDLY LAKGLGLSPE TKRVMLYFAG CSGGVAGLRV AKDIAENNPG SRVLLATSET TIIGFKPPSV
201: DRPYDLVGVA LFGDGAGAMI IGSNPIRDIE RPLFELHTAI QHFLPDTEKI IDGRLTEEGI SFKLERELPQ IIEDNIEGFC DKLISISGIN DREYNKLFWA
301: VHPGGPAILN RLEKKLDLSP EKLSASRRAL ADYGNASSNT IVYVLEYMLE EKKDITDWGL ILAFGPGITF EGILTKNLTI

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.