CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03253
CDY39816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	CDY03253	AT1G62940.1	23632852
AT4G34850.1	CDY39816	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017681.1-P	Field mustard	cytosol	98.98	98.98
CDX72506	Canola	cytosol	97.19	97.19
CDX75466	Canola	cytosol	96.43	96.43
CDX69091	Canola	cytosol	95.92	95.92
CDY34811	Canola	cytosol	95.66	95.66
CDY58814	Canola	cytosol	95.66	95.66
CDY17490	Canola	cytosol	95.41	95.41
AT4G34850.1	Thale cress	cytosol	92.86	92.86
VIT_03s0038g01460.t01	Wine grape	cytosol	81.38	81.38
KRH29108	Soybean	cytosol	80.1	81.14
PGSC0003DMT400004133	Potato	cytosol	78.06	80.53
Solyc01g111070.2.1	Tomato	cytosol	77.55	79.37
KRH24136	Soybean	cytosol	71.68	74.54
Os07t0411300-00	Rice	cytosol	69.13	66.91
EER98407	Sorghum	cytosol	69.9	65.55
CDX93339	Canola	mitochondrion	64.54	64.38
Zm00001d019478_P001	Maize	cytosol	68.37	64.27
TraesCS5A01G002900.1	Wheat	cytosol	69.13	64.22
CDY18415	Canola	cytosol, mitochondrion	64.29	64.12
TraesCS5B01G003100.1	Wheat	cytosol	68.37	63.96
TraesCS5D01G003600.1	Wheat	cytosol	68.62	63.9
CDY21499	Canola	mitochondrion	61.99	61.99
CDX83215	Canola	mitochondrion	61.73	61.73
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	68.88	59.08
CDY05664	Canola	cytosol	40.56	40.36
CDX78547	Canola	cytosol	40.05	39.85
CDY51056	Canola	cytosol	40.05	39.85
CDY09836	Canola	cytosol	40.05	39.75
CDX69618	Canola	cytosol	40.05	39.75
CDX70528	Canola	cytosol	40.05	39.65
CDX91090	Canola	cytosol	39.54	39.14
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	67.86	35.37
CDY07114	Canola	cytosol	36.73	35.12
CDY05666	Canola	mitochondrion	37.24	34.93

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	GO:A0A078HSG5	UniProt:A0A078HSG5	EnsemblPlants:CDY40656	ProteinID:CDY40656
ProteinID:CDY40656.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00071525001
InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0004EE312C	SEG:seg	:

Description

BnaA03g53070DBnaA03g53070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSG5]

Coordinates

chrLK032476:-:283865..285545

Molecular Weight (calculated)

42907.6 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.214

Length

392 amino acids

Sequence
(BLAST)

001: MGSIDATELG SEKKPNPGKA TILAIGKAFP HQLVMQEYLV DGYFKTTNCD DPELKQKLTR LCKTTTVKTR YVVMSEEILT KYPELAIEGG STVKQRLDIC
101: NDAVTEMAVE ASRSCIKNWG RSVSDITHLV YVSSSEARLP GGDLFLAKGL GLSPETHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSKDRPYD LVGVALFGDG AGAMIIGSDP DPVSEKPLFE LHTAIQNFLP DTEKTIDGRL TESGINFTLS RELPQIIEDN VESFCKKLLG KAGLAHKDYN
301: QMFWAVHPGG PAILNRMEKR LNLSPEKLSP SRRSLMDYGN ASSNSIVYVL EYMLEESRKA RKMNEGENEW GLILAFGPGV TFEGIVARNL DV

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.