CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03253
CDY39816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	CDY03253	AT1G62940.1	23632852
AT4G34850.1	CDY39816	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034658.1-P	Field mustard	cytosol	98.72	98.72
CDY17490	Canola	cytosol	97.45	97.45
CDX75466	Canola	cytosol	95.92	95.92
CDY40656	Canola	cytosol	95.66	95.66
CDY34811	Canola	cytosol	95.15	95.15
CDX69091	Canola	cytosol	94.9	94.9
CDX72506	Canola	cytosol	93.88	93.88
AT4G34850.1	Thale cress	cytosol	92.86	92.86
VIT_03s0038g01460.t01	Wine grape	cytosol	80.87	80.87
KRH29108	Soybean	cytosol	79.08	80.1
PGSC0003DMT400004133	Potato	cytosol	77.3	79.74
Solyc01g111070.2.1	Tomato	cytosol	76.79	78.59
KRH24136	Soybean	cytosol	69.9	72.68
Os07t0411300-00	Rice	cytosol	68.88	66.67
EER98407	Sorghum	cytosol	68.88	64.59
TraesCS5A01G002900.1	Wheat	cytosol	69.39	64.45
TraesCS5B01G003100.1	Wheat	cytosol	68.88	64.44
TraesCS5D01G003600.1	Wheat	cytosol	69.13	64.37
Zm00001d019478_P001	Maize	cytosol	67.6	63.55
CDX93339	Canola	mitochondrion	63.01	62.85
CDY18415	Canola	cytosol, mitochondrion	62.76	62.6
CDY21499	Canola	mitochondrion	61.48	61.48
CDX83215	Canola	mitochondrion	61.22	61.22
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	69.39	59.52
CDY05664	Canola	cytosol	40.56	40.36
CDY51056	Canola	cytosol	40.05	39.85
CDY09836	Canola	cytosol	39.8	39.49
CDX69618	Canola	cytosol	39.8	39.49
CDX78547	Canola	cytosol	39.54	39.34
CDX70528	Canola	cytosol	39.54	39.14
CDX91090	Canola	cytosol	39.29	38.89
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	67.6	35.24
CDY07114	Canola	cytosol	36.48	34.88
CDY05666	Canola	mitochondrion	36.99	34.69

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	GO:A0A078J0R3	UniProt:A0A078J0R3	EnsemblPlants:CDY58814	ProteinID:CDY58814
ProteinID:CDY58814.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00025164001
InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0004EE5A09	:	:

Description

BnaAnng15370DBnaAnng15370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0R3]

Coordinates

chrLK033701:-:23912..25450

Molecular Weight (calculated)

42790.5 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.155

Length

392 amino acids

Sequence
(BLAST)

001: MGSIDATELG SEKKPNPGKA TILAIGKAFP QQLVMQEYLV DGYFKTTNCD DPELKQKLTR LCNTTTVKTR YVVMSEEILN KYPELAIEGG STVKQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHLV YVSSSEARLP SGDLFLAKGL GLSPETHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTVIGF
201: KPPSADRPYD LVGVALFGDG AGAMIIGSDP DPILEKPLFE LHTAIQNFLP DTEKTIDGKL TEQGINFTLS RELPQIIEDN VESFCKKLIG KAGLAHIDYN
301: QMFWAVHPGG PAILNRMEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESRKA RNMNEGGNEW GLILAFGPGV TFEGIVARNL DV

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.