CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03253
CDY39816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02050.1	CDY03253	AT1G62940.1	23632852
AT1G02050.1	CDY39816	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93339	Canola	mitochondrion	98.47	98.47
AT1G02050.1	Thale cress	mitochondrion	92.11	91.65
VIT_15s0021g02170.t01	Wine grape	cytosol	78.88	79.69
KRH75257	Soybean	cytosol	78.37	79.38
CDY21499	Canola	mitochondrion	79.13	79.34
CDX83215	Canola	mitochondrion	79.13	79.34
PGSC0003DMT400095725	Potato	plastid	75.83	75.25
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	65.9	72.35
CDY40656	Canola	cytosol	64.12	64.29
CDX75466	Canola	cytosol	64.12	64.29
CDX69091	Canola	cytosol	63.87	64.03
CDX72506	Canola	cytosol	63.61	63.78
CDY34811	Canola	cytosol	63.61	63.78
CDY17490	Canola	cytosol	62.85	63.01
TraesCS1D01G157500.1	Wheat	cytosol	62.34	62.82
CDY58814	Canola	cytosol	62.6	62.76
TraesCS1A01G160300.1	Wheat	cytosol	62.09	62.56
TraesCS1B01G176300.1	Wheat	cytosol	61.83	62.31
Zm00001d032662_P001	Maize	plastid	61.58	62.05
Os10t0484800-01	Rice	cytosol	61.32	61.95
Zm00001d013991_P001	Maize	mitochondrion	60.31	56.29
EER91459	Sorghum	cytosol	61.07	49.48
HORVU1Hr1G042510.2	Barley	cytosol	61.07	49.38
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	99.24	43.62
CDY09836	Canola	cytosol	39.19	38.99
CDX69618	Canola	cytosol	39.19	38.99
CDX78547	Canola	cytosol	38.93	38.83
CDX70528	Canola	cytosol	38.93	38.64
CDY51056	Canola	cytosol	38.68	38.58
CDX91090	Canola	cytosol	38.68	38.38
CDY05664	Canola	cytosol	38.17	38.07
CDY07114	Canola	cytosol	35.37	33.9
CDY05666	Canola	mitochondrion	35.37	33.25

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	GO:A0A078FVE9	UniProt:A0A078FVE9	EnsemblPlants:CDY18415	ProteinID:CDY18415
ProteinID:CDY18415.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00005406001
InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0004EED3CA	SEG:seg	:

Description

BnaA04g21720DBnaA04g21720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVE9]

Coordinates

chrLK032085:+:341464..342728

Molecular Weight (calculated)

43176.2 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.182

Length

393 amino acids

Sequence
(BLAST)

001: MSSSGMNGVK KQISTRRVAN PGKATVLALG KAFPSQVVPQ EHLVEGFLRD TKCDDPFIKE KLEHLCKTTT VKTRYTVLSR EILDKYPELT TEGSPTIKQR
101: LEIANEAVVE MALEASLGCI KEWGRTVEDI THIVYVSSSE IRLPGGDLYL SAKLGLKSDV NRVMLYFLGC YGGVTGLRVA KDIAENNPGS RVLLTTSETT
201: ILGFRPPNKA RPYDLVGAAL FGDGAAAVII GADPLPSEAP FMELHYAVQQ FVPGTQTVID GRLTEEGINF KLGRDLPQKI EENIEEFCKK LMAKAGDDSI
301: EFNDMFWTVH PGGPAILNRL ETKLKLGREK LECSRRALVD YGNVSSNTIL YVMEYMRDEL KKKGDGAQEW GLGLAFGPGI TFEGLLLRSL ASP

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.