Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_01s0010g03720.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G02050.1 | VIT_01s0010g03720.t01 | AT1G62940.1 | 23632852 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH75257 | Soybean | cytosol | 82.78 | 82.99 |
PGSC0003DMT400095725 | Potato | plastid | 80.98 | 79.55 |
CDX93339 | Canola | mitochondrion | 79.69 | 78.88 |
CDY18415 | Canola | cytosol, mitochondrion | 79.69 | 78.88 |
AT1G02050.1 | Thale cress | mitochondrion | 79.43 | 78.23 |
Solyc01g090600.2.1 | Tomato | cytosol, extracellular, mitochondrion, peroxisome | 71.21 | 77.37 |
AT4G00040.1 | Thale cress | cytosol, mitochondrion | 73.26 | 74.03 |
Bra000559.1-P | Field mustard | mitochondrion | 74.29 | 73.72 |
CDY21499 | Canola | mitochondrion | 74.04 | 73.47 |
CDX83215 | Canola | mitochondrion | 73.78 | 73.21 |
VIT_03s0038g01460.t01 | Wine grape | cytosol | 65.3 | 64.8 |
TraesCS1D01G157500.1 | Wheat | cytosol | 63.24 | 63.08 |
TraesCS1A01G160300.1 | Wheat | cytosol | 62.72 | 62.56 |
TraesCS1B01G176300.1 | Wheat | cytosol | 62.72 | 62.56 |
Os10t0484800-01 | Rice | cytosol | 62.21 | 62.21 |
Zm00001d032662_P001 | Maize | plastid | 61.44 | 61.28 |
Zm00001d013991_P001 | Maize | mitochondrion | 60.15 | 55.58 |
HORVU1Hr1G042510.2 | Barley | cytosol | 62.21 | 49.79 |
EER91459 | Sorghum | cytosol | 60.67 | 48.66 |
VIT_16s0022g01020.t01 | Wine grape | cytosol | 33.93 | 42.86 |
VIT_16s0100g00800.t01 | Wine grape | cytosol | 34.7 | 42.59 |
VIT_05s0136g00260.t01 | Wine grape | cytosol | 41.13 | 41.13 |
VIT_16s0100g00990.t01 | Wine grape | cytosol | 41.39 | 41.07 |
VIT_16s0100g01010.t01 | Wine grape | cytosol | 41.39 | 41.07 |
VIT_16s0100g00840.t01 | Wine grape | cytosol | 41.39 | 41.07 |
VIT_10s0042g00930.t01 | Wine grape | cytosol | 41.39 | 41.07 |
VIT_10s0042g00920.t01 | Wine grape | cytosol | 41.39 | 41.07 |
VIT_16s0100g01140.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g00750.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g00770.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g01150.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g00830.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g01170.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g01120.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g00910.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g00920.t01 | Wine grape | cytosol | 41.13 | 40.82 |
VIT_16s0100g00780.t01 | Wine grape | cytosol | 40.87 | 40.56 |
VIT_16s0100g01030.t01 | Wine grape | cytosol | 40.87 | 40.56 |
VIT_16s0100g01040.t01 | Wine grape | cytosol | 40.62 | 40.31 |
VIT_16s0100g00900.t01 | Wine grape | cytosol | 40.62 | 40.31 |
VIT_16s0100g00940.t01 | Wine grape | cytosol | 40.62 | 40.31 |
VIT_16s0100g00930.t01 | Wine grape | cytosol | 40.62 | 40.31 |
VIT_16s0100g00850.t01 | Wine grape | cytosol | 40.62 | 40.31 |
VIT_16s0100g01000.t01 | Wine grape | cytosol | 40.36 | 40.05 |
VIT_16s0100g01020.t01 | Wine grape | cytosol | 40.36 | 40.05 |
VIT_16s0100g00880.t01 | Wine grape | cytosol | 40.36 | 40.05 |
VIT_14s0068g00930.t01 | Wine grape | cytosol | 40.36 | 39.95 |
VIT_14s0068g00920.t01 | Wine grape | cytosol | 40.36 | 39.95 |
VIT_10s0042g00910.t01 | Wine grape | cytosol | 36.76 | 39.07 |
VIT_16s0100g00860.t01 | Wine grape | cytosol | 35.48 | 38.76 |
VIT_16s0100g01130.t01 | Wine grape | cytosol | 40.62 | 37.09 |
Bra017147.1-P | Field mustard | cytosol, peroxisome, plastid | 79.69 | 34.68 |
VIT_16s0100g01110.t01 | Wine grape | cytosol, mitochondrion, nucleus | 36.25 | 2.72 |
VIT_12s0059g01780.t01 | Wine grape | extracellular, mitochondrion, nucleus | 3.86 | 0.79 |
Protein Annotations
EntrezGene:100259793 | wikigene:100259793 | MapMan:21.8.1.4 | Gene3D:3.40.47.10 | EMBL:AM452412 | ProteinID:CAN83038 |
ProteinID:CAN83038.1 | ProteinID:CCB43863 | ProteinID:CCB43863.1 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | UniProt:F6GV80 |
EMBL:FN594952 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | EntrezGene:LOC100259793 | wikigene:LOC100259793 |
PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 | PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III |
SUPFAM:SSF53901 | InterPro:Thiolase-like | UniParc:UPI00015C9A92 | ArrayExpress:VIT_15s0021g02170 | EnsemblPlantsGene:VIT_15s0021g02170 | EnsemblPlants:VIT_15s0021g02170.t01 |
unigene:Vvi.5226 | RefSeq:XP_002276642 | RefSeq:XP_002276642.1 | : | : | : |
Description
No Description!
Coordinates
chr15:-:13099190..13100695
Molecular Weight (calculated)
42961.4 Da
IEP (calculated)
6.670
GRAVY (calculated)
-0.135
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQMERNGAP KHDVALARRL PMPGKATVLA MGKAFPSQLI PQECLVEGYF RDTKCQDLAI KEKLERLCKT TTVKTRYTVM SKEILEKYPE LATEGSPTIK
101: QKLEIANPAV LQMAMEASLA CIEEWGRPVG DITHIVYVSS SEIRLPGGDL YLASQLGLRS DVGRIMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KERPYDLVGA ALFGDGAAAV IVGTDPIPGK ECPFMELNHA VQQFLPGTHN VIDGRLSEEG INFKLGRDLP AKIEENIEEF CKKLMEKAGL
301: VEFNDLFWAV HPGGPAILNR LESTLKLRSE KLECSRRALM DYGNVSSNTI FYVMEYMREA LKRKGGEEWG LALAFGPGIT FEGILIRSL
101: QKLEIANPAV LQMAMEASLA CIEEWGRPVG DITHIVYVSS SEIRLPGGDL YLASQLGLRS DVGRIMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KERPYDLVGA ALFGDGAAAV IVGTDPIPGK ECPFMELNHA VQQFLPGTHN VIDGRLSEEG INFKLGRDLP AKIEENIEEF CKKLMEKAGL
301: VEFNDLFWAV HPGGPAILNR LESTLKLRSE KLECSRRALM DYGNVSSNTI FYVMEYMREA LKRKGGEEWG LALAFGPGIT FEGILIRSL
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
Arabidopsis Description
PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.