Factsheet for VIT_16s0100g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00920.t01	Wine grape	cytosol	98.98	98.98
VIT_16s0100g00800.t01	Wine grape	cytosol	79.08	97.79
VIT_16s0100g00900.t01	Wine grape	cytosol	94.9	94.9
VIT_16s0100g01040.t01	Wine grape	cytosol	94.9	94.9
VIT_16s0100g00850.t01	Wine grape	cytosol	94.64	94.64
VIT_16s0100g00930.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g00940.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g01000.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g00860.t01	Wine grape	cytosol	85.71	94.38
VIT_16s0100g01020.t01	Wine grape	cytosol	93.88	93.88
VIT_16s0100g00770.t01	Wine grape	cytosol	93.88	93.88
VIT_16s0100g00880.t01	Wine grape	cytosol	93.88	93.88
VIT_16s0100g01140.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01010.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g01030.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g01120.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g00830.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g01150.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g00910.t01	Wine grape	cytosol	92.86	92.86
VIT_16s0100g01170.t01	Wine grape	cytosol	92.86	92.86
VIT_16s0100g00750.t01	Wine grape	cytosol	92.86	92.86
VIT_16s0100g00780.t01	Wine grape	cytosol	92.6	92.6
VIT_16s0100g00990.t01	Wine grape	cytosol	92.6	92.6
VIT_10s0042g00920.t01	Wine grape	cytosol	92.35	92.35
VIT_10s0042g00930.t01	Wine grape	cytosol	92.35	92.35
VIT_10s0042g00910.t01	Wine grape	cytosol	83.67	89.62
VIT_16s0100g01130.t01	Wine grape	cytosol	92.35	84.98
VIT_14s0068g00920.t01	Wine grape	cytosol	76.53	76.34
VIT_14s0068g00930.t01	Wine grape	cytosol	76.28	76.08
VIT_05s0136g00260.t01	Wine grape	cytosol	73.98	74.55
VIT_16s0022g01020.t01	Wine grape	cytosol	53.83	68.51
GSMUA_Achr6P08170_001	Banana	cytosol	62.5	66.58
GSMUA_Achr6P08180_001	Banana	cytosol	63.27	62.0
TraesCS7B01G462200.1	Wheat	cytosol	46.17	60.54
VIT_15s0021g02170.t01	Wine grape	cytosol	41.07	41.39
VIT_03s0038g01460.t01	Wine grape	cytosol	39.8	39.8
VIT_16s0100g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	78.83	5.97
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.06	0.64

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:100853820	wikigene:100853820	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	ProteinID:CCB56450
ProteinID:CCB56450.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N	UniProt:F6HP44	EMBL:FN596000
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100853820	wikigene:LOC100853820	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF27	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0002108550	ArrayExpress:VIT_16s0100g00840	EnsemblPlantsGene:VIT_16s0100g00840	EnsemblPlants:VIT_16s0100g00840.t01
RefSeq:XP_003634076	RefSeq:XP_003634076.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:16343076..16344518

Molecular Weight (calculated)

42973.8 Da

IEP (calculated)

6.991

GRAVY (calculated)

-0.113

Length

392 amino acids

Sequence
(BLAST)

001: MASVEEIRNA QRAKGPATVL AIGTATPDNC LYQSDFADYY FRVTKSEHMT ELKKKFNRIC DKSMIKKRYS HLTEEMLEEH PNIGAYMAPS LNIRQEIITA
101: EVPKLGKEAA LKALKEWGQP KSKITHLVFC TTSGVEMPGA DYKLANLLGL ETSVRRVMLY HQGCYAGGTV LRTAKDLAEN NAGARVLVVC SEITVVTFRG
201: PSETALDSLV GQALFGDGSA TVIVGSDPDL SIERPLFQLV SAAQTFIPNT QGAIAGNLRE VGLTFHLWPN VPTLISENIE KCLNQAFDPI GINDWNSLFW
301: IAHPGGPAIL NAVEAKLSLD KQKLKATRHV LSEYGNMSSA CVLFIMDEMR KKSLKEQKTT TGEGLDWGVL FGFGPGLTIE TVVLHSIPRD SN

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.