Factsheet for VIT_16s0100g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00860.t01	Wine grape	cytosol	90.05	99.16
VIT_16s0100g00850.t01	Wine grape	cytosol	98.21	98.21
VIT_16s0100g00930.t01	Wine grape	cytosol	97.96	97.96
VIT_16s0100g01000.t01	Wine grape	cytosol	97.19	97.19
VIT_16s0100g00900.t01	Wine grape	cytosol	97.19	97.19
VIT_16s0100g01020.t01	Wine grape	cytosol	96.68	96.68
VIT_16s0100g00880.t01	Wine grape	cytosol	96.68	96.68
VIT_16s0100g01040.t01	Wine grape	cytosol	95.66	95.66
VIT_16s0100g00920.t01	Wine grape	cytosol	94.9	94.9
VIT_16s0100g00840.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g01140.t01	Wine grape	cytosol	94.13	94.13
VIT_16s0100g01010.t01	Wine grape	cytosol	94.13	94.13
VIT_16s0100g00770.t01	Wine grape	cytosol	94.13	94.13
VIT_16s0100g00800.t01	Wine grape	cytosol	76.02	94.01
VIT_16s0100g01170.t01	Wine grape	cytosol	93.62	93.62
VIT_16s0100g00990.t01	Wine grape	cytosol	93.62	93.62
VIT_16s0100g00830.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01030.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g00750.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g01120.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g00780.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g00910.t01	Wine grape	cytosol	93.11	93.11
VIT_16s0100g01150.t01	Wine grape	cytosol	92.6	92.6
VIT_10s0042g00920.t01	Wine grape	cytosol	92.35	92.35
VIT_10s0042g00930.t01	Wine grape	cytosol	92.35	92.35
VIT_10s0042g00910.t01	Wine grape	cytosol	82.91	88.8
VIT_16s0100g01130.t01	Wine grape	cytosol	92.35	84.98
VIT_14s0068g00920.t01	Wine grape	cytosol	78.06	77.86
VIT_14s0068g00930.t01	Wine grape	cytosol	78.06	77.86
VIT_05s0136g00260.t01	Wine grape	cytosol	74.74	75.32
VIT_16s0022g01020.t01	Wine grape	cytosol	53.57	68.18
GSMUA_Achr6P08170_001	Banana	cytosol	63.78	67.93
GSMUA_Achr6P08180_001	Banana	cytosol	64.29	63.0
TraesCS7B01G462200.1	Wheat	cytosol	46.68	61.2
VIT_15s0021g02170.t01	Wine grape	cytosol	40.31	40.62
VIT_03s0038g01460.t01	Wine grape	cytosol	40.31	40.31
VIT_16s0100g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	79.59	6.02
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.32	0.69

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:100853526	wikigene:100853526	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	ProteinID:AAT84810
ProteinID:AAT84810.1	ProteinID:AAT84837	ProteinID:AAT84837.1	EMBL:AM459972	EMBL:AY670143	EMBL:AY670170
ProteinID:CAN72348	ProteinID:CAN72348.1	ProteinID:CCB56441	ProteinID:CCB56441.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS
InterPro:Chalcone/stilbene_synthase_N	UniProt:F6HP35	EMBL:FN596000	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
EntrezGene:LOC100853526	wikigene:LOC100853526	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441
PANTHER:PTHR11877	PANTHER:PTHR11877:SF27	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000210854A
ArrayExpress:VIT_16s0100g00940	EnsemblPlantsGene:VIT_16s0100g00940	EnsemblPlants:VIT_16s0100g00940.t01	RefSeq:XP_003634070	RefSeq:XP_003634070.1	SEG:seg

Description

No Description!

Coordinates

chr16:-:16411757..16413318

Molecular Weight (calculated)

42814.9 Da

IEP (calculated)

6.713

GRAVY (calculated)

-0.024

Length

392 amino acids

Sequence
(BLAST)

001: MASVEEIRNA QRAKGPATVL AIGTATPDNC LYQSDFADYY FRVTKSEHMT ELKKKFNRIC DKSMIKKRYI HLTEEMLEEH PNIGAYMAPS LNIRQEIITA
101: EVPKLGKEAA LKALKEWGQP KSKITHLVFC TTSGVEMPGA DYKLANLLGL EPSVRRVMLY HQGCYAGGTV LRIAKDLAEN NAGARVLVVC SEITVVTFRG
201: PSETALDSLV GQALFGDGSA AVIIGSDPDI SIERPLFQLV SAAQTFIPNS AGAIAGNLRE VGLTFQLWPN VPSLISENIE KCLTKAFDPI GISDWNSLFW
301: IAHPGGPAIL DAVEAKLNLD KQKLKATRHI LSEYGNMSSA CVLFILDEMR KKSLKEGKIT TGEGLDWGVL FGFGPGLTIE TVVLHSVQMD SN

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.