CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000559.1-P	Field mustard	mitochondrion	99.49	99.49
CDX83215	Canola	mitochondrion	99.49	99.49
AT4G00040.1	Thale cress	cytosol, mitochondrion	89.03	90.65
CDY18415	Canola	cytosol, mitochondrion	79.34	79.13
CDX93339	Canola	mitochondrion	79.34	79.13
VIT_15s0021g02170.t01	Wine grape	cytosol	73.47	74.04
KRH75257	Soybean	cytosol	72.45	73.2
PGSC0003DMT400095725	Potato	plastid	70.92	70.2
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	60.46	66.2
CDX75466	Canola	cytosol	62.24	62.24
CDY40656	Canola	cytosol	61.99	61.99
CDX69091	Canola	cytosol	61.99	61.99
CDY34811	Canola	cytosol	61.73	61.73
CDY58814	Canola	cytosol	61.48	61.48
CDX72506	Canola	cytosol	61.22	61.22
CDY17490	Canola	cytosol	61.22	61.22
Zm00001d032662_P001	Maize	plastid	59.95	60.26
TraesCS1A01G160300.1	Wheat	cytosol	59.18	59.49
TraesCS1B01G176300.1	Wheat	cytosol	59.18	59.49
TraesCS1D01G157500.1	Wheat	cytosol	59.18	59.49
Os10t0484800-01	Rice	cytosol	58.67	59.13
Zm00001d013991_P001	Maize	mitochondrion	58.42	54.39
HORVU1Hr1G042510.2	Barley	cytosol	58.67	47.33
EER91459	Sorghum	cytosol	58.16	47.01
CDY51056	Canola	cytosol	40.82	40.61
CDY05664	Canola	cytosol	40.31	40.1
CDY09836	Canola	cytosol	39.29	38.99
CDX78547	Canola	cytosol	39.03	38.83
CDX69618	Canola	cytosol	39.03	38.73
CDX70528	Canola	cytosol	39.03	38.64
CDX91090	Canola	cytosol	38.52	38.13
CDY07114	Canola	cytosol	36.22	34.63
CDY05666	Canola	mitochondrion	36.73	34.45

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	GO:A0A078G7W3	UniProt:A0A078G7W3	EnsemblPlants:CDY21499	ProteinID:CDY21499
ProteinID:CDY21499.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00015932001
InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0004EEF852	SEG:seg	:

Description

BnaC03g26980DBnaC03g26980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7W3]

Coordinates

chrLK032121:-:606860..608910

Molecular Weight (calculated)

42933.7 Da

IEP (calculated)

5.858

GRAVY (calculated)

-0.204

Length

392 amino acids

Sequence
(BLAST)

001: MLATGRVAKQ KEIAQSTRRV ANQGKATVLA LGKAFPSNVV SQENLVEEYL REIKCDDPSI KEKLQHLCKT TTVKTRYTVM SSETMQKYPE LATEGTPTIK
101: QRLEIANDAV VQMAYEASLA CIKEWGRGVE DITHLVYVSS SEFRLPGGDL YLSAQLGLSN EVQRVMFYFL GCYGGVSGMR VAKDIAENNP GSRVLLTTSE
201: TMVLGFRPPN KARPYDLVGA ALFGDGAAAL IIGADPTESE SPFMELHYAL QQFLPGTQGV IDGRLSEEGI SFKLGRELPQ KIEDNIEEFC KKLVAKAGSG
301: SLELNDLFWA VHPGGPAILN GLETKLKLKP EKLECSRQAL VDYGNASSNT IFYIMDKVRG ELEKKGRGGE EWGLGLAFGP GITFEGFLMR SL

Best Arabidopsis Sequence Match ( AT4G00040.1 )
(BLAST)

001: MLVSARVEKQ KRVAYQGKAT VLALGKALPS NVVSQENLVE EYLREIKCDN LSIKDKLQHL CKSTTVKTRY TVMSRETLHK YPELATEGSP TIKQRLEIAN
101: DAVVQMAYEA SLVCIKEWGR AVEDITHLVY VSSSEFRLPG GDLYLSAQLG LSNEVQRVML YFLGCYGGLS GLRVAKDIAE NNPGSRVLLT TSETTVLGFR
201: PPNKARPYNL VGAALFGDGA AALIIGADPT ESESPFMELH CAMQQFLPQT QGVIDGRLSE EGITFKLGRD LPQKIEDNVE EFCKKLVAKA GSGALELNDL
301: FWAVHPGGPA ILSGLETKLK LKPEKLECSR RALMDYGNVS SNTIFYIMDK VRDELEKKGT EGEEWGLGLA FGPGITFEGF LMRNL

Arabidopsis Description

Type III polyketide synthase C [Source:UniProtKB/Swiss-Prot;Acc:O81305]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.