Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34850.1 | CDY03253 | AT1G62940.1 | 23632852 |
| AT4G34850.1 | CDY39816 | AT1G62940.1 | 23632852 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40656 | Canola | cytosol | 97.19 | 97.19 |
| Bra017681.1-P | Field mustard | cytosol | 96.17 | 96.17 |
| CDX75466 | Canola | cytosol | 95.41 | 95.41 |
| CDY34811 | Canola | cytosol | 94.64 | 94.64 |
| CDX69091 | Canola | cytosol | 94.64 | 94.64 |
| CDY58814 | Canola | cytosol | 93.88 | 93.88 |
| CDY17490 | Canola | cytosol | 93.62 | 93.62 |
| AT4G34850.1 | Thale cress | cytosol | 91.58 | 91.58 |
| VIT_03s0038g01460.t01 | Wine grape | cytosol | 80.87 | 80.87 |
| PGSC0003DMT400004133 | Potato | cytosol | 78.06 | 80.53 |
| KRH29108 | Soybean | cytosol | 79.34 | 80.36 |
| Solyc01g111070.2.1 | Tomato | cytosol | 77.55 | 79.37 |
| KRH24136 | Soybean | cytosol | 70.66 | 73.47 |
| Os07t0411300-00 | Rice | cytosol | 68.62 | 66.42 |
| EER98407 | Sorghum | cytosol | 69.13 | 64.83 |
| TraesCS5A01G002900.1 | Wheat | cytosol | 68.88 | 63.98 |
| CDX93339 | Canola | mitochondrion | 64.03 | 63.87 |
| Zm00001d019478_P001 | Maize | cytosol | 67.86 | 63.79 |
| TraesCS5B01G003100.1 | Wheat | cytosol | 68.11 | 63.72 |
| TraesCS5D01G003600.1 | Wheat | cytosol | 68.37 | 63.66 |
| CDY18415 | Canola | cytosol, mitochondrion | 63.78 | 63.61 |
| CDX83215 | Canola | mitochondrion | 61.48 | 61.48 |
| CDY21499 | Canola | mitochondrion | 61.22 | 61.22 |
| HORVU5Hr1G000690.2 | Barley | cytosol, peroxisome | 68.62 | 58.86 |
| CDY05664 | Canola | cytosol | 40.56 | 40.36 |
| CDY51056 | Canola | cytosol | 40.05 | 39.85 |
| CDY09836 | Canola | cytosol | 39.8 | 39.49 |
| CDX69618 | Canola | cytosol | 39.8 | 39.49 |
| CDX78547 | Canola | cytosol | 39.54 | 39.34 |
| CDX70528 | Canola | cytosol | 39.54 | 39.14 |
| CDX91090 | Canola | cytosol | 39.29 | 38.89 |
| CDY07114 | Canola | cytosol | 36.73 | 35.12 |
| GSMUA_Achr5P17860_001 | Banana | cytosol, nucleus, peroxisome | 67.35 | 35.11 |
| CDY05666 | Canola | mitochondrion | 37.24 | 34.93 |
Protein Annotations
| MapMan:21.8.1.4 | Gene3D:3.40.47.10 | GO:A0A078C649 | EnsemblPlants:CDX72506 | ProteinID:CDX72506 | ProteinID:CDX72506.1 |
| InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | EnsemblPlantsGene:GSBRNA2T00100038001 | InterPro:IPR016039 |
| PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 | PANTHER:PTHR11877 | PANTHER:PTHR11877:SF31 | InterPro:Polyketide_synthase_type-III |
| SUPFAM:SSF53901 | InterPro:Thiolase-like | UniParc:UPI0004EE00FB | : | : | : |
Description
BnaC07g45280D
Coordinates
chrLK031796:+:1621126..1622824
Molecular Weight (calculated)
42819.4 Da
IEP (calculated)
5.539
GRAVY (calculated)
-0.189
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSIDATELA SEKKPNPGKA TILAIGKAFP HQLVMQEYLV DGYFKTTNCD DPELKQKLTR LCKTTTVKTR YVVMSEEILT KYPEIAIEGG STVKQRLDIC
101: NDAVTEMAVE ASRSCIKNWG RSVSDITHLV YVSSSEARLP GGDLFLAKGL GLSPETHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSKDRPYD LVGVALFGDG AGAMIIGSDP DPVSEKPLFE LHTAIQNFIP DTEKTIDGRL TETGINFTLS RELPQIIEDN VESFCKKLIG KAGLADKDYN
301: QMFWAVHPGG PAILNRMEKR LNLSPEKLSP SRRSLMDYGN ASSNSIVYVL EYMLEESRKS RSMSGSENEW GLILAFGPGV TFEGIVARNL DV
101: NDAVTEMAVE ASRSCIKNWG RSVSDITHLV YVSSSEARLP GGDLFLAKGL GLSPETHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSKDRPYD LVGVALFGDG AGAMIIGSDP DPVSEKPLFE LHTAIQNFIP DTEKTIDGRL TETGINFTLS RELPQIIEDN VESFCKKLIG KAGLADKDYN
301: QMFWAVHPGG PAILNRMEKR LNLSPEKLSP SRRSLMDYGN ASSNSIVYVL EYMLEESRKS RSMSGSENEW GLILAFGPGV TFEGIVARNL DV
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
Arabidopsis Description
PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.