Factsheet for Bra017681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036646.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	Bra036646.1-P	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40656	Canola	cytosol	98.98	98.98
CDX72506	Canola	cytosol	96.17	96.17
Bra011566.1-P	Field mustard	cytosol	95.41	95.41
Bra034658.1-P	Field mustard	cytosol	95.41	95.41
AT4G34850.1	Thale cress	cytosol	91.84	91.84
KRH29108	Soybean	cytosol	79.85	80.88
VIT_03s0038g01460.t01	Wine grape	cytosol	80.87	80.87
PGSC0003DMT400004133	Potato	cytosol	78.06	80.53
Solyc01g111070.2.1	Tomato	cytosol	77.55	79.37
KRH24136	Soybean	cytosol	71.43	74.27
Os07t0411300-00	Rice	cytosol	69.13	66.91
EER98407	Sorghum	cytosol	69.9	65.55
Zm00001d019478_P001	Maize	cytosol	68.37	64.27
TraesCS5A01G002900.1	Wheat	cytosol	69.13	64.22
TraesCS5B01G003100.1	Wheat	cytosol	68.37	63.96
TraesCS5D01G003600.1	Wheat	cytosol	68.62	63.9
Bra000559.1-P	Field mustard	mitochondrion	61.48	61.48
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	68.88	59.08
Bra020688.1-P	Field mustard	cytosol	40.31	40.1
Bra008792.1-P	Field mustard	cytosol	39.29	38.99
Bra006224.1-P	Field mustard	cytosol	39.03	38.64
Bra023441.1-P	Field mustard	cytosol	38.27	38.07
Bra036307.1-P	Field mustard	cytosol	37.5	37.4
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	67.86	35.37
Bra017147.1-P	Field mustard	cytosol, peroxisome, plastid	64.29	28.19

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	EnsemblPlantsGene:Bra017681	EnsemblPlants:Bra017681.1	EnsemblPlants:Bra017681.1-P	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M4DME8	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI000254128F	SEG:seg	:	:	:

Description

AT4G34850 (E=1e-203) | chalcone and stilbene synthase family protein

Coordinates

chrA03:+:29742247..29743792

Molecular Weight (calculated)

42804.5 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.219

Length

392 amino acids

Sequence
(BLAST)

001: MGSIDATELG SEKKPNPGKA TILAIGKAFP HQLVMQEYLV DGYFKTTNCD DPELKQKLTR LCKTTTVKTR YVVMSEEILT KYPELAIEGG STVKQRLDIC
101: NDAVTEMAVE ASRSCIKNWG RSVSDITHLV YVSSSEARLP GGDLFLAKGL GLSPETHRVL LSFGGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSKDRPYD LVGVALFGDG AGAMIIGSDP ARVSEKPLFE LHTAIQNFLP DTEKTIDGRL TESGINFTLS RELPQIIEDN VESFCKKLLG KAGLAHKDYN
301: QMFWAVHPGG PAILNRMEKR LNLSPEKLSP SRRSLMDYGN ASSNSIVYVL EYMLEESRKA RKMNEGENEW GLILAFGPGV TFEGIVARNL DV

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.