CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98485
KRH46374

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	KRG98485	AT1G62940.1	23632852
AT4G34850.1	KRH46374	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29108	Soybean	cytosol	89.66	87.34
PGSC0003DMT400004133	Potato	cytosol	76.66	76.05
Solyc01g111070.2.1	Tomato	cytosol	75.6	74.41
VIT_03s0038g01460.t01	Wine grape	cytosol	76.39	73.47
AT4G34850.1	Thale cress	cytosol	75.33	72.45
CDY40656	Canola	cytosol	74.54	71.68
CDX75466	Canola	cytosol	74.54	71.68
Bra011566.1-P	Field mustard	cytosol	74.54	71.68
CDX69091	Canola	cytosol	74.27	71.43
Bra017681.1-P	Field mustard	cytosol	74.27	71.43
CDY34811	Canola	cytosol	73.74	70.92
CDX72506	Canola	cytosol	73.47	70.66
Bra034658.1-P	Field mustard	cytosol	73.47	70.66
CDY17490	Canola	cytosol	72.94	70.15
CDY58814	Canola	cytosol	72.68	69.9
Os07t0411300-00	Rice	cytosol	66.31	61.73
EER98407	Sorghum	cytosol	66.84	60.29
Zm00001d019478_P001	Maize	cytosol	65.52	59.23
TraesCS5B01G003100.1	Wheat	cytosol	65.78	59.19
TraesCS5A01G002900.1	Wheat	cytosol	66.05	59.0
TraesCS5D01G003600.1	Wheat	cytosol	65.78	58.91
KRH75257	Soybean	cytosol	59.68	57.99
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	65.78	54.27
KRH42776	Soybean	cytosol	26.79	39.61
KRH37579	Soybean	cytosol	36.87	35.82
KRH75544	Soybean	cytosol	36.87	35.82
KRH71115	Soybean	cytosol	36.87	35.82
KRH27737	Soybean	cytosol	36.87	35.73
KRH77699	Soybean	endoplasmic reticulum	36.87	35.73
KRG94730	Soybean	cytosol	36.87	35.55
KRH42757	Soybean	cytosol	36.34	35.31
KRH58872	Soybean	cytosol	36.34	35.31
KRH42783	Soybean	cytosol	36.34	35.31
KRH42780	Soybean	cytosol	36.34	35.31
KRH42778	Soybean	cytosol	36.34	35.31
KRH42775	Soybean	cytosol	36.34	35.31
KRH42759	Soybean	cytosol	36.34	35.31
KRH42758	Soybean	cytosol	36.34	35.31
KRH42760	Soybean	cytosol	36.07	35.05
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	63.13	31.65
KRH18039	Soybean	cytosol	26.53	31.45

Protein Annotations

MapMan:21.8.1.4	Gene3D:3.40.47.10	EMBL:ACUP02007171	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	EnsemblPlantsGene:GLYMA_12G023800
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	UniProt:I1LPG2	InterPro:IPR016039	EnsemblPlants:KRH24136	ProteinID:KRH24136
ProteinID:KRH24136.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI00029644F6	:	:

Description

hypothetical protein

Coordinates

chr12:+:1741556..1743168

Molecular Weight (calculated)

41343.1 Da

IEP (calculated)

5.066

GRAVY (calculated)

-0.007

Length

377 amino acids

Sequence
(BLAST)

001: MGNEGIMNGV IKQRVNPGKA TILALGKAFP HQLVMQEYLV DGYSQTVTIL NSSRSSLDFV SKTTTVKTRY VVMSEEILKK YPELAAEGIP TVKQRLEICN
101: EAVTEMAIEA SQTCIKNWGG SLSDVTHLVY VSFSEARLPG GDLYLEKGLG LSPDTQRVML YFAGCSGGVA GLLLLATSET TIIGSKPPSV DRPYDLVGVA
201: LFGDGAGAMI IGSDPILESE RPLFELHTAV QEFLRHTEKK IDGRLTEEGI SFKLARELPQ IIEDNVEGFC DKLMSVVGFE NKEYNKLFWA VHPGGPAILN
301: RIEKRLDLLP EKLSASRRAL MDYGNASSNT IVYVLEFMIE ESLKIRKDGR GDLEWGLILA FGPGITFEGI LARNLCA

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.