Factsheet for PGSC0003DMT400049165

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009175
PGSC0003DMT400009287
PGSC0003DMT400036565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	PGSC0003DMT400009175	AT3G51240.1	10536025
AT5G13930.1	PGSC0003DMT400036565	AT5G08640.1	18467451
AT5G13930.1	PGSC0003DMT400036565	AT5G08640.1	21669202
AT5G13930.1	PGSC0003DMT400009287	AT5G42800.1	10536025
AT5G13930.1	PGSC0003DMT400009287	AT5G42800.1	21669202
AT5G13930.1	PGSC0003DMT400036565	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	99.23	99.23
PGSC0003DMT400076178	Potato	cytosol	91.52	91.52
VIT_14s0068g00930.t01	Wine grape	cytosol	88.69	87.79
VIT_14s0068g00920.t01	Wine grape	cytosol	88.69	87.79
KRG94730	Soybean	cytosol	88.17	87.72
PGSC0003DMT400076179	Potato	cytosol	82.52	84.7
CDX78547	Canola	cytosol	85.6	84.52
CDX70528	Canola	cytosol	85.6	84.09
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	67.1	83.39
Bra006224.1-P	Field mustard	cytosol	84.83	83.33
CDX69618	Canola	cytosol	84.58	83.29
AT5G13930.1	Thale cress	cytosol	84.58	83.29
EES09858	Sorghum	cytosol	85.6	83.04
CDY09836	Canola	cytosol	84.32	83.04
CDX91090	Canola	cytosol	84.32	82.83
Bra008792.1-P	Field mustard	cytosol	84.06	82.78
EES09865	Sorghum	cytosol	85.09	82.54
EES09864	Sorghum	cytosol	84.83	82.5
KXG29016	Sorghum	cytosol	84.83	82.29
EES09860	Sorghum	cytosol	84.83	82.29
EES09863	Sorghum	cytosol	84.83	82.29
EES09859	Sorghum	cytosol	84.83	82.29
EES08604	Sorghum	cytosol	84.83	82.29
Bra023441.1-P	Field mustard	cytosol	83.29	82.23
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	84.06	82.16
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	69.15	82.01
EES09862	Sorghum	cytosol	84.32	81.8
TraesCS2A01G025700.1	Wheat	cytosol, golgi	82.52	81.47
TraesCS2A01G035300.1	Wheat	cytosol	82.26	81.22
TraesCS2A01G025600.1	Wheat	cytosol	82.26	81.22
TraesCS2B01G038700.1	Wheat	cytosol	82.26	81.22
TraesCS2D01G027700.1	Wheat	cytosol	82.26	81.22
TraesCS2A01G527700.2	Wheat	cytosol	83.03	81.16
HORVU2Hr1G116390.2	Barley	cytosol	83.03	81.16
TraesCS2D01G027800.1	Wheat	cytosol	43.96	81.04
Zm00001d052673_P001	Maize	cytosol	83.29	81.0
TraesCS2B01G048400.1	Wheat	cytosol	82.01	80.96
TraesCS2D01G027900.2	Wheat	cytosol	82.01	80.96
TraesCS2B01G558400.1	Wheat	cytosol	82.78	80.9
HORVU2Hr1G005220.3	Barley	cytosol	81.75	80.51
TraesCS2A01G025500.1	Wheat	cytosol	81.49	80.46
TraesCS2D01G034500.1	Wheat	cytosol	81.49	80.25
Zm00001d007403_P001	Maize	cytosol	82.26	79.8
GSMUA_Achr10P...	Banana	cytosol	66.32	79.63
TraesCS2B01G038600.1	Wheat	cytosol	73.78	79.28
CDY51056	Canola	cytosol	79.95	78.93
Bra020688.1-P	Field mustard	cytosol	79.69	78.68
Bra036307.1-P	Field mustard	cytosol	79.18	78.37
TraesCS2B01G613100.1	Wheat	cytosol	80.21	78.2
CDY05664	Canola	cytosol	78.92	77.92
TraesCS5D01G488600.1	Wheat	cytosol	78.15	76.96
TraesCS5D01G488700.1	Wheat	cytosol	78.15	76.96
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	76.35	75.19
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	76.09	74.94
TraesCS1B01G041000.1	Wheat	cytosol	76.09	74.94
PGSC0003DMT400022254	Potato	cytosol	74.81	74.62
TraesCS1A01G032100.1	Wheat	cytosol	75.58	74.43
TraesCS1B01G040100.1	Wheat	cytosol	75.58	74.43
PGSC0003DMT400043447	Potato	cytosol	74.55	74.36
HORVU2Hr1G004170.4	Barley	plastid	82.52	74.13
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	76.61	74.13
TraesCS1D01G033600.1	Wheat	cytosol	75.84	73.93
TraesCS1A01G032300.1	Wheat	cytosol	75.58	73.87
TraesCS1D01G033800.1	Wheat	cytosol	75.32	73.62
TraesCS1B01G040500.1	Wheat	cytosol	75.32	73.43
CDY07114	Canola	cytosol	77.38	73.41
EES14634	Sorghum	cytosol	75.06	73.37
HORVU1Hr1G089540.1	Barley	mitochondrion	74.55	72.68
HORVU1Hr1G004830.1	Barley	cytosol	74.04	72.54
GSMUA_Achr10P...	Banana	mitochondrion	62.21	70.55
PGSC0003DMT400022258	Potato	cytosol	70.95	70.41
Os07t0214900-00	Rice	cytosol	72.49	69.98
PGSC0003DMT400022255	Potato	cytosol	59.9	69.97
PGSC0003DMT400043464	Potato	cytosol	72.49	69.8
PGSC0003DMT400069814	Potato	cytosol	68.89	68.37
TraesCS2D01G530600.1	Wheat	cytosol, plastid	83.03	67.57
CDY05666	Canola	mitochondrion	70.18	65.31
PGSC0003DMT400004133	Potato	cytosol	43.7	44.74
PGSC0003DMT400095725	Potato	plastid	39.33	38.64

Protein Annotations

KEGG:00941+2.3.1.74	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	ProteinID:AAB05239	ProteinID:AAB05239.1	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009813	GO:GO:0016210	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	UniProt:M1BNC5	PFAM:PF00195	PFAM:PF02797	EnsemblPlantsGene:PGSC0003DMG400019110	PGSC:PGSC0003DMG400019110
EnsemblPlants:PGSC0003DMT400049165	PIRSF:PIRSF000451	ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF43	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	EMBL:U47738	UniParc:UPI0002948E9B	:	:

Description

Chalcone synthase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400019110]

Coordinates

chr5:+:48886960..48888729

Molecular Weight (calculated)

42589.7 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.078

Length

389 amino acids

Sequence
(BLAST)

001: MVTVEEVRRA QRAKGPATIM AIGTATPSNC VDQSTYPDYY FRITNSEHMT ELKEKFKRMC DKSMINKRYM HLTEEILKEN PNICEYMAPS LDARQDIVVV
101: EVPKLGKEAA QKAIKEWGQP KSKITHVVFC TTSGVDMPGA DYQLTKLLGL RPSVKRLMMY QQGCFAGGTV IRLAKDLAEN NKGARVLVVC SEITAVTFRG
201: PSDTHLDSMV GQALFGDGAA AMIIGSDPLP EVERPLFEVV SAAQTLLPDS EGAIDGHLRE VGLTFHLLKD VPGLISKNIE KSLIEAFQPI GISDWNSIFW
301: IAHPGGPAIL DQVELKLGLK PEKLRATRQV LSDYGNMSSA CVLFILDEMR KASSKEGLST TGEGLDWGVL FGFGPGLTVE TVVLHSVST

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.