Factsheet for TraesCS1B01G040500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G493500.1
TraesCS2B01G521500.1
TraesCS2B01G613300.1
TraesCS2D01G493400.1
TraesCS3A01G226600.1
TraesCS3B01G257900.2
TraesCS3D01G224600.1
TraesCS4B01G344800.1
TraesCS4B01G344900.1
TraesCS4D01G339800.1
TraesCS5A01G475600.1
TraesCS5A01G513700.1
TraesCS5B01G488900.1
TraesCS5D01G489000.1
TraesCS6A01G331400.1
TraesCS6B01G362100.1
TraesCS6D01G310700.1
TraesCS7B01G038200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	TraesCS2A01G493500.1	AT3G51240.1	10536025
AT5G13930.1	TraesCS2B01G521500.1	AT3G51240.1	10536025
AT5G13930.1	TraesCS2B01G613300.1	AT3G51240.1	10536025
AT5G13930.1	TraesCS2D01G493400.1	AT3G51240.1	10536025
AT5G13930.1	TraesCS5A01G475600.1	AT3G55120.1	10536025
AT5G13930.1	TraesCS5B01G488900.1	AT3G55120.1	10536025
AT5G13930.1	TraesCS5D01G489000.1	AT3G55120.1	10536025
AT5G13930.1	TraesCS7B01G038200.1	AT3G55120.1	10536025
AT5G13930.1	TraesCS4B01G344800.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS4B01G344900.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS4D01G339800.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS5A01G513700.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS6A01G331400.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS6B01G362100.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS6D01G310700.1	AT5G08640.1	18467451
AT5G13930.1	TraesCS4B01G344800.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS4B01G344900.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS4D01G339800.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS5A01G513700.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS6A01G331400.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS6B01G362100.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS6D01G310700.1	AT5G08640.1	21669202
AT5G13930.1	TraesCS3A01G226600.1	AT5G42800.1	10536025
AT5G13930.1	TraesCS3B01G257900.2	AT5G42800.1	10536025
AT5G13930.1	TraesCS3D01G224600.1	AT5G42800.1	10536025
AT5G13930.1	TraesCS3A01G226600.1	AT5G42800.1	21669202
AT5G13930.1	TraesCS3B01G257900.2	AT5G42800.1	21669202
AT5G13930.1	TraesCS3D01G224600.1	AT5G42800.1	21669202
AT5G13930.1	TraesCS4B01G344800.1	AT5G63590.1	18467451
AT5G13930.1	TraesCS4B01G344900.1	AT5G63590.1	18467451
AT5G13930.1	TraesCS4D01G339800.1	AT5G63590.1	18467451
AT5G13930.1	TraesCS5A01G513700.1	AT5G63590.1	18467451
AT5G13930.1	TraesCS6A01G331400.1	AT5G63590.1	18467451
AT5G13930.1	TraesCS6B01G362100.1	AT5G63590.1	18467451
AT5G13930.1	TraesCS6D01G310700.1	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G032100.1	Wheat	cytosol	96.49	97.47
TraesCS1B01G041000.1	Wheat	cytosol	96.24	97.22
TraesCS1D01G033600.1	Wheat	cytosol	96.99	96.99
TraesCS1A01G032300.1	Wheat	cytosol	96.49	96.73
TraesCS1D01G033800.1	Wheat	cytosol	95.74	95.98
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	94.99	95.95
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	94.99	95.95
TraesCS1B01G040100.1	Wheat	cytosol	94.74	95.7
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	95.24	94.53
HORVU1Hr1G004830.1	Barley	cytosol	93.98	94.46
TraesCS2B01G038700.1	Wheat	cytosol	78.95	79.95
TraesCS2B01G038600.1	Wheat	cytosol	72.18	79.56
TraesCS2B01G048400.1	Wheat	cytosol	78.2	79.19
TraesCS2B01G613100.1	Wheat	cytosol	78.95	78.95
TraesCS2B01G558400.1	Wheat	cytosol	78.7	78.89
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	61.4	78.27
GSMUA_Achr10P...	Banana	cytosol	62.66	77.16
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	63.16	76.83
AT5G13930.1	Thale cress	cytosol	75.69	76.46
CDX78547	Canola	cytosol	75.44	76.4
CDX69618	Canola	cytosol	75.44	76.2
VIT_14s0068g00930.t01	Wine grape	cytosol	74.94	76.08
KRH42776	Soybean	cytosol	48.62	76.08
CDX70528	Canola	cytosol	75.44	76.01
CDY09836	Canola	cytosol	75.19	75.95
Bra008792.1-P	Field mustard	cytosol	74.94	75.7
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	73.68	75.58
VIT_14s0068g00920.t01	Wine grape	cytosol	74.44	75.57
CDX91090	Canola	cytosol	74.94	75.51
Os07t0214900-00	Rice	cytosol	76.19	75.43
Solyc09g091510.2.1	Tomato	cytosol, extracellular	73.43	75.32
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	73.43	75.32
Bra006224.1-P	Field mustard	cytosol	74.69	75.25
PGSC0003DMT400076178	Potato	cytosol	73.18	75.06
KRH58872	Soybean	cytosol	72.93	75.0
KRH37579	Soybean	cytosol	72.93	75.0
KRH42758	Soybean	cytosol	72.93	75.0
KRH42759	Soybean	cytosol	72.93	75.0
KRH42775	Soybean	cytosol	72.93	75.0
KRH42783	Soybean	cytosol	72.93	75.0
VIT_05s0136g00260.t01	Wine grape	cytosol	72.93	74.81
KRH42778	Soybean	cytosol	72.68	74.74
KRH42780	Soybean	cytosol	72.68	74.74
KRH75544	Soybean	cytosol	72.68	74.74
KRH42757	Soybean	cytosol	72.68	74.74
Bra023441.1-P	Field mustard	cytosol	73.68	74.62
KRH42760	Soybean	cytosol	72.18	74.23
KRH71115	Soybean	cytosol	72.18	74.23
EES14634	Sorghum	cytosol	73.93	74.12
Bra036307.1-P	Field mustard	cytosol	72.43	73.54
KRG94730	Soybean	cytosol	71.93	73.4
CDY51056	Canola	cytosol	71.43	72.33
CDY05664	Canola	cytosol	71.43	72.33
KRH27737	Soybean	cytosol	70.43	72.24
Bra020688.1-P	Field mustard	cytosol	71.18	72.08
KRH77699	Soybean	endoplasmic reticulum	69.92	71.72
PGSC0003DMT400076179	Potato	cytosol	67.67	71.24
CDY07114	Canola	cytosol	71.18	69.27
GSMUA_Achr10P...	Banana	mitochondrion	58.65	68.22
TraesCS7B01G462200.1	Wheat	cytosol	48.62	64.88
CDY05666	Canola	mitochondrion	62.91	60.05
TraesCS6B01G327900.1	Wheat	cytosol	41.6	49.7
TraesCS5B01G383300.1	Wheat	cytosol, mitochondrion	48.37	49.61
TraesCS4B01G021600.1	Wheat	cytosol	49.37	49.13
TraesCS6B01G185200.2	Wheat	cytosol, mitochondrion, plastid	47.37	48.59
TraesCS2B01G072600.1	Wheat	mitochondrion	48.62	48.38
TraesCS5B01G487700.1	Wheat	cytosol	47.87	48.23
TraesCS6B01G245200.1	Wheat	mitochondrion	40.6	48.21
TraesCS2B01G007000.1	Wheat	cytosol	46.87	46.75
TraesCS2B01G041300.1	Wheat	cytosol	44.86	46.37
TraesCS4B01G357800.1	Wheat	cytosol	34.09	45.64
TraesCS2B01G019200.1	Wheat	cytosol	45.36	45.59
TraesCS6B01G022300.1	Wheat	cytosol	45.61	45.27
TraesCS4B01G357100.1	Wheat	mitochondrion	37.09	44.98
TraesCS2B01G006000.1	Wheat	cytosol	43.86	44.42
TraesCS2B01G006800.1	Wheat	cytosol	41.35	44.35
TraesCS4B01G357700.1	Wheat	mitochondrion	26.32	44.3
TraesCS6B01G022500.1	Wheat	cytosol	45.61	44.28
TraesCS4B01G357600.1	Wheat	mitochondrion	26.82	44.21
TraesCS2B01G006700.1	Wheat	cytosol	43.36	43.91
TraesCS7B01G371700.1	Wheat	plastid	43.11	39.18
TraesCS1B01G176300.1	Wheat	cytosol	37.59	38.46
TraesCS5B01G003100.1	Wheat	cytosol	40.35	38.42
TraesCS2B01G006300.1	Wheat	extracellular, golgi	43.86	37.88

Protein Annotations

KEGG:00941+2.3.1.74	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451
ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
EnsemblPlantsGene:TraesCS1B01G040500	EnsemblPlants:TraesCS1B01G040500.1	TIGR:cd00831	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:20046035..20047787

Molecular Weight (calculated)

43523.6 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.078

Length

399 amino acids

Sequence
(BLAST)

001: MAAVKLEEVR RAQRAEGLAT VLAIGTAVPA NCVYQATYPD YYFRVTKSEH LSDLKEKFER MCEKSTIRKR HMHLTEEILK KNPSLCSHME PSLDTRHDIV
101: VVEVPKLGKE AAERAIKEWG QPLSKITHVV FCTTSGVDMP GADYQLTRLL GLSPTVKRLM MYQQGCFGGA TVLRMAKDIA ENNRGARVLV VCSEITAMAF
201: RGPSKSHLDS LVGHALFGDG AAAAIIGADP DEPFEKPLFQ LVSASQTILP GSEDAINGHL TEAGLTIHLL KDVPGLISEN IEQALEDAFK PLGIHNWNSI
301: FWIAHPGGPA ILDMVEEKVG LDKERMRASR EVLSEYGNMS SACVLFVLDV MRKTSSQDGQ ATTGEGKEWG VLFGFGPGLT VETLVLYSVP ITATIKGSS

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.