Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G112670.1 | Barley | cytosol | 95.67 | 95.67 |
| TraesCS5A01G475600.1 | Wheat | golgi, plastid | 93.51 | 94.32 |
| TraesCS5B01G488900.1 | Wheat | golgi | 91.34 | 91.34 |
| EER90629 | Sorghum | cytosol | 77.06 | 77.06 |
| Os03t0819600-01 | Rice | cytosol, plasma membrane | 77.49 | 76.82 |
| Zm00001d012972_P001 | Maize | cytosol | 74.89 | 74.89 |
| Zm00001d034635_P001 | Maize | cytosol, extracellular | 74.46 | 74.46 |
| Solyc05g010320.2.1 | Tomato | cytosol | 56.71 | 57.96 |
| VIT_13s0067g03820.t01 | Wine grape | extracellular | 58.44 | 57.69 |
| GSMUA_Achr4P16830_001 | Banana | cytosol | 56.28 | 55.08 |
| Solyc05g010310.2.1 | Tomato | cytosol | 50.22 | 52.25 |
| KRG92978 | Soybean | plastid | 49.35 | 50.0 |
| AT3G55120.1 | Thale cress | plastid | 51.95 | 48.78 |
| CDY40202 | Canola | plastid | 52.81 | 48.41 |
| CDY53696 | Canola | plastid | 41.56 | 48.24 |
| CDX73402 | Canola | plastid | 52.38 | 48.21 |
| Bra007142.1-P | Field mustard | plastid | 52.38 | 48.21 |
| AT5G66220.1 | Thale cress | cytosol | 35.06 | 46.55 |
| CDY65002 | Canola | plastid | 44.59 | 45.37 |
| Bra003209.1-P | Field mustard | plastid | 44.16 | 44.93 |
| CDX72554 | Canola | plastid | 45.45 | 44.87 |
| Bra017728.1-P | Field mustard | plastid | 38.1 | 44.67 |
| CDY47033 | Canola | plastid | 36.36 | 43.75 |
| Bra039362.1-P | Field mustard | cytosol | 15.58 | 39.56 |
| CDY71367 | Canola | cytosol | 14.72 | 35.79 |
| CDX73401 | Canola | plastid | 45.45 | 34.54 |
| CDY40203 | Canola | plastid | 40.26 | 33.82 |
| Bra007145.1-P | Field mustard | plastid | 43.72 | 33.78 |
| TraesCS5D01G145400.1 | Wheat | cytosol, golgi | 28.14 | 29.95 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G489000.1 | EnsemblPlantsGene:TraesCS5D01G489000 | Gene3D:1.10.890.20 | Gene3D:3.50.70.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016872 | InterPro:Chalcone_isomerase | InterPro:Chalcone_isomerase_3-sand | InterPro:Chalcone_isomerase_bundle_sf | InterPro:Chalcone_isomerase_sf | InterPro:IPR016088 |
| InterPro:IPR016089 | KEGG:00941+5.5.1.6 | PANTHER:PTHR28039 | PANTHER:PTHR28039:SF8 | PFAM:PF02431 | SEG:seg |
| SUPFAM:SSF54626 | MapMan:9.2.2.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:524334758..524335665
Molecular Weight (calculated)
23698.1 Da
IEP (calculated)
4.579
GRAVY (calculated)
0.326
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSELEVDG VVFPPLARPP GSEHAHFLAG AGVRGMEIGG NFIKFTAIGV YLQADAAVSA LAAKWAGKPA ADLASDAAFF RDVVTGEFEK FTRVTMILPL
101: TGAQYSDKVT ENCVAYWKAT GVYTDAEAAA VDKFKEAFGP HSFAPGASIL FTHSPAGLLT VAFSKDSSVP ESGGVAIDNA RLCEAVLESI IGEHGVSPAA
201: KLSLATRVAE LLEGAALAGG EPAAEAVSVS V
101: TGAQYSDKVT ENCVAYWKAT GVYTDAEAAA VDKFKEAFGP HSFAPGASIL FTHSPAGLLT VAFSKDSSVP ESGGVAIDNA RLCEAVLESI IGEHGVSPAA
201: KLSLATRVAE LLEGAALAGG EPAAEAVSVS V
001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
Arabidopsis Description
CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.