Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G112670.1 | Barley | cytosol | 78.54 | 79.22 |
| TraesCS5A01G475600.1 | Wheat | golgi, plastid | 77.68 | 79.04 |
| EER90629 | Sorghum | cytosol | 77.68 | 78.36 |
| TraesCS5D01G489000.1 | Wheat | cytosol | 76.82 | 77.49 |
| Zm00001d034635_P001 | Maize | cytosol, extracellular | 76.39 | 77.06 |
| Zm00001d012972_P001 | Maize | cytosol | 74.68 | 75.32 |
| TraesCS5B01G488900.1 | Wheat | golgi | 72.96 | 73.59 |
| Solyc05g010320.2.1 | Tomato | cytosol | 59.66 | 61.5 |
| VIT_13s0067g03820.t01 | Wine grape | extracellular | 60.09 | 59.83 |
| GSMUA_Achr4P16830_001 | Banana | cytosol | 58.8 | 58.05 |
| Solyc05g010310.2.1 | Tomato | cytosol | 52.36 | 54.95 |
| AT3G55120.1 | Thale cress | plastid | 52.79 | 50.0 |
| KRG92978 | Soybean | plastid | 48.93 | 50.0 |
| CDX73402 | Canola | plastid | 52.79 | 49.0 |
| CDY40202 | Canola | plastid | 52.79 | 48.81 |
| Bra007142.1-P | Field mustard | plastid | 52.36 | 48.61 |
| CDY53696 | Canola | plastid | 41.2 | 48.24 |
| AT5G66220.1 | Thale cress | cytosol | 35.19 | 47.13 |
| CDY65002 | Canola | plastid | 45.06 | 46.26 |
| Bra003209.1-P | Field mustard | plastid | 44.64 | 45.81 |
| Bra017728.1-P | Field mustard | plastid | 37.77 | 44.67 |
| CDX72554 | Canola | plastid | 44.64 | 44.44 |
| CDY47033 | Canola | plastid | 35.62 | 43.23 |
| Bra039362.1-P | Field mustard | cytosol | 15.88 | 40.66 |
| CDY71367 | Canola | cytosol | 15.02 | 36.84 |
| CDX73401 | Canola | plastid | 46.35 | 35.53 |
| CDY40203 | Canola | plastid | 41.2 | 34.91 |
| Bra007145.1-P | Field mustard | plastid | 44.21 | 34.45 |
| Os11t0116300-01 | Rice | cytosol, plasma membrane | 27.47 | 30.19 |
| Os12t0115700-01 | Rice | cytosol | 27.04 | 29.72 |
Protein Annotations
| KEGG:00941+5.5.1.6 | Gene3D:1.10.890.20 | Gene3D:3.50.70.10 | EntrezGene:4334588 | MapMan:9.2.2.2.1 | ProteinID:AAM13448.1 |
| ProteinID:AAO65886.1 | ProteinID:ABF99575.1 | EMBL:AK061390 | EMBL:AK104791 | ProteinID:BAF13628.1 | ProteinID:BAS87077.1 |
| InterPro:Chalcone_isomerase | InterPro:Chalcone_isomerase_3-sand | InterPro:Chalcone_isomerase_bundle_sf | InterPro:Chalcone_isomerase_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009813 | GO:GO:0016853 | GO:GO:0016872 |
| GO:GO:0045430 | GO:GO:0080167 | InterPro:IPR016088 | InterPro:IPR016089 | EnsemblPlantsGene:Os03g0819600 | EnsemblPlants:Os03t0819600-01 |
| PFAM:PF02431 | PANTHER:PTHR28039 | PANTHER:PTHR28039:SF8 | UniProt:Q84T92 | SUPFAM:SSF54626 | UniParc:UPI00000560E3 |
| RefSeq:XP_015628287.1 | : | : | : | : | : |
Description
gold hull and internode 1, chalcone isomerase, chalcone flavonone isomeraseChalcone isomerase (EC 5.5.1.6). (Os03t0819600-01);Chalcone isomerase (EC 5.5.1.6). (Os03t0819600-02)
Coordinates
chr3:-:34394508..34395638
Molecular Weight (calculated)
23894.3 Da
IEP (calculated)
4.936
GRAVY (calculated)
0.206
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVSEVEVD GVVFPPVARP PGSGHAHFLA GAGVRGVEIA GNFIKFTAIG VYLEEGAAVP ALAKKWAGKS ADELAADAAF FRDVVTGDFE KFTRVTMILP
101: LTGEQYSDKV TENCVAAWKA AGVYTDAEGA AADKFKEAFK PHSFPPGASI LFTHSPPGVL TVAFSKDSSV PEGAVAAAAI ENRALCEAVL DSIIGEHGVS
201: PAAKRSIAAR VSQLLKAEST GDVAAAEPAP VSA
101: LTGEQYSDKV TENCVAAWKA AGVYTDAEGA AADKFKEAFK PHSFPPGASI LFTHSPPGVL TVAFSKDSSV PEGAVAAAAI ENRALCEAVL DSIIGEHGVS
201: PAAKRSIAAR VSQLLKAEST GDVAAAEPAP VSA
001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
Arabidopsis Description
CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.