Factsheet for Zm00001d012972_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001960_P001
Zm00001d007403_P001
Zm00001d011438_P001
Zm00001d044122_P001
Zm00001d052673_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	Zm00001d001960_P001	AT3G51240.1	10536025
AT3G55120.1	Zm00001d007403_P001	AT5G13930.1	10536025
AT3G55120.1	Zm00001d052673_P001	AT5G13930.1	10536025
AT3G55120.1	Zm00001d011438_P001	AT5G42800.1	10536025
AT3G55120.1	Zm00001d044122_P001	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034635_P001	Maize	cytosol, extracellular	86.58	86.58
EER90629	Sorghum	cytosol	84.42	84.42
TraesCS5A01G475600.1	Wheat	golgi, plastid	74.89	75.55
HORVU5Hr1G112670.1	Barley	cytosol	75.32	75.32
TraesCS5D01G489000.1	Wheat	cytosol	74.89	74.89
Os03t0819600-01	Rice	cytosol, plasma membrane	75.32	74.68
TraesCS5B01G488900.1	Wheat	golgi	72.29	72.29
VIT_13s0067g03820.t01	Wine grape	extracellular	62.77	61.97
Solyc05g010320.2.1	Tomato	cytosol	59.31	60.62
GSMUA_Achr4P16830_001	Banana	cytosol	58.01	56.78
Solyc05g010310.2.1	Tomato	cytosol	54.11	56.31
KRG92978	Soybean	plastid	50.65	51.32
AT3G55120.1	Thale cress	plastid	54.55	51.22
CDX73402	Canola	plastid	54.11	49.8
Bra007142.1-P	Field mustard	plastid	54.11	49.8
CDY40202	Canola	plastid	54.11	49.6
CDY53696	Canola	plastid	42.42	49.25
AT5G66220.1	Thale cress	cytosol	36.36	48.28
CDY65002	Canola	plastid	46.32	47.14
Bra003209.1-P	Field mustard	plastid	45.89	46.7
Bra017728.1-P	Field mustard	plastid	39.39	46.19
CDX72554	Canola	plastid	46.75	46.15
CDY47033	Canola	plastid	36.8	44.27
Bra039362.1-P	Field mustard	cytosol	16.45	41.76
CDY71367	Canola	cytosol	16.02	38.95
CDX73401	Canola	plastid	46.32	35.2
CDY40203	Canola	plastid	41.13	34.55
Bra007145.1-P	Field mustard	plastid	44.16	34.11
Zm00001d044683_P001	Maize	cytosol, extracellular	29.0	28.03

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:9.2.2.2.1	ProteinID:AQK61967.1	EMBL:BT088420
UniProt:C4JC73	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0016853	GO:GO:0016872	InterPro:IPR016088	InterPro:IPR016089	PFAM:PF02431
PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	SUPFAM:SSF54626	UniParc:UPI0001A4C1C6	EnsemblPlantsGene:Zm00001d012972	EnsemblPlants:Zm00001d012972_P001
EnsemblPlants:Zm00001d012972_T001	SEG:seg	:	:	:	:

Description

chalcone flavanone isomerase3 chalcone flavanone isomerase3

Coordinates

chr5:+:2582304..2583969

Molecular Weight (calculated)

23691.5 Da

IEP (calculated)

7.626

GRAVY (calculated)

0.331

Length

231 amino acids

Sequence
(BLAST)

001: MAVPEVVVDG VVFPPAARPP GSAGSHFLGG AGVRGLEIGG NFVKFTAIGV YLEDAAVPAL ARKWAGKTAG ELASDAAFFR DVVTGGFEKF ARVTMIRPLT
101: GEQYAGKVAE NCVAYWKAAG LYTDAEGVAV EKFKQVFKPH TFPPGASIHF THSPAGVLTV AFSRDSSVPV AGGVAIDNKL LCEAVLESII GEHGVSPAAK
201: LSLAARVSEL LTKGTAAAAA ALRAEPVSVT A

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.