Factsheet for VIT_13s0067g03820.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02090.t01
VIT_04s0023g03370.t01
VIT_05s0136g00260.t01
VIT_14s0068g00920.t01
VIT_14s0068g00930.t01
VIT_18s0001g14310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	VIT_04s0023g03370.t01	AT3G51240.1	10536025
AT3G55120.1	VIT_18s0001g14310.t01	AT3G51240.1	10536025
AT3G55120.1	VIT_05s0136g00260.t01	AT5G13930.1	10536025
AT3G55120.1	VIT_14s0068g00920.t01	AT5G13930.1	10536025
AT3G55120.1	VIT_14s0068g00930.t01	AT5G13930.1	10536025
AT3G55120.1	VIT_04s0023g02090.t01	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010320.2.1	Tomato	cytosol	64.1	66.37
EER90629	Sorghum	cytosol	63.25	64.07
Zm00001d034635_P001	Maize	cytosol, extracellular	62.82	63.64
Zm00001d012972_P001	Maize	cytosol	61.97	62.77
KRG92978	Soybean	plastid	60.68	62.28
Solyc05g010310.2.1	Tomato	cytosol	58.97	62.16
AT3G55120.1	Thale cress	plastid	64.1	60.98
TraesCS5A01G475600.1	Wheat	golgi, plastid	58.97	60.26
CDX73402	Canola	plastid	64.53	60.16
Os03t0819600-01	Rice	cytosol, plasma membrane	59.83	60.09
Bra007142.1-P	Field mustard	plastid	63.68	59.36
CDY40202	Canola	plastid	63.68	59.13
HORVU5Hr1G112670.1	Barley	cytosol	58.12	58.87
TraesCS5D01G489000.1	Wheat	cytosol	57.69	58.44
Bra017728.1-P	Field mustard	plastid	49.15	58.38
CDY53696	Canola	plastid	49.57	58.29
CDY65002	Canola	plastid	56.41	58.15
Bra003209.1-P	Field mustard	plastid	55.98	57.71
CDY47033	Canola	plastid	46.58	56.77
TraesCS5B01G488900.1	Wheat	golgi	55.98	56.71
CDX72554	Canola	plastid	55.98	55.98
GSMUA_Achr4P16830_001	Banana	cytosol	55.56	55.08
AT5G66220.1	Thale cress	cytosol	37.61	50.57
TraesCS7B01G038200.1	Wheat	cytosol	44.44	46.43
Bra039362.1-P	Field mustard	cytosol	17.95	46.15
CDY71367	Canola	cytosol	17.52	43.16
CDY40203	Canola	plastid	47.44	40.36
Bra007145.1-P	Field mustard	plastid	50.85	39.8
CDX73401	Canola	plastid	51.28	39.47
VIT_13s0067g02870.t01	Wine grape	extracellular	27.78	26.32

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	EntrezGene:100233078	wikigene:100233078	Gene3D:3.50.70.10	MapMan:9.2.2.2.1
UniProt:A5ANT9	ProteinID:ADP07931	ProteinID:ADP07931.1	EMBL:AM430986	EMBL:AM458653	ProteinID:CAA53577
ProteinID:CAA53577.1	ProteinID:CAN60439	ProteinID:CAN60439.1	ProteinID:CAN74526	ProteinID:CAN74526.1	ProteinID:CBI25307
ProteinID:CBI25307.3	EntrezGene:CHI	wikigene:CHI	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf
InterPro:Chalcone_isomerase_sf	UniProt:D7T475	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009813	GO:GO:0016853	GO:GO:0016872	GO:GO:0045430
GO:GO:0080167	EMBL:GU585854	InterPro:IPR016088	InterPro:IPR016089	PFAM:PF02431	PANTHER:PTHR28039
PANTHER:PTHR28039:SF8	SUPFAM:SSF54626	TIGR:TC55034	UniParc:UPI000151F122	ArrayExpress:VIT_13s0067g03820	EnsemblPlantsGene:VIT_13s0067g03820
EnsemblPlants:VIT_13s0067g03820.t01	unigene:Vvi.124	EMBL:X75963	:	:	:

Description

CHI2Chalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:D7T475]

Coordinates

chr13:-:2162379..2164042

Molecular Weight (calculated)

25083.1 Da

IEP (calculated)

4.998

GRAVY (calculated)

0.033

Length

234 amino acids

Sequence
(BLAST)

001: MSPVPSVTAV QVENVLFPPS VKPPGSTNDL FLGGAGVRGL EIQGKFVKFT AIGVYLESSA VPTLAVKWKG KTVEELADSV DFFRDVVTGP FEKFTKVTTI
101: LPLTGRQYSD KVSENCVAFW KSVGIYTDAE AKAIEKFNEV LKDETFPPGN SILFTHSPLG ALTMSFSKDG SLPEVGNAVI ENKLLTEAVL ESIIGKHGVS
201: PEAKKSLAAR LSELFCKEAG DEKIEAEKVA PVAC

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.