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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69618
CDX70528
CDX73739
CDX76159
CDX76765
CDX77983
CDX78547
CDX90656
CDX91090
CDX95155
CDY07114
CDY09836
CDY21246
CDY29008
CDY52372

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G55120.1 CDX73739 AT3G51240.1 10536025
AT3G55120.1 CDX76159 AT3G51240.1 10536025
AT3G55120.1 CDX76765 AT3G51240.1 10536025
AT3G55120.1 CDX77983 AT3G51240.1 10536025
AT3G55120.1 CDX90656 AT3G51240.1 10536025
AT3G55120.1 CDY29008 AT3G51240.1 10536025
AT3G55120.1 CDX69618 AT5G13930.1 10536025
AT3G55120.1 CDX70528 AT5G13930.1 10536025
AT3G55120.1 CDX78547 AT5G13930.1 10536025
AT3G55120.1 CDX91090 AT5G13930.1 10536025
AT3G55120.1 CDY07114 AT5G13930.1 10536025
AT3G55120.1 CDY09836 AT5G13930.1 10536025
AT3G55120.1 CDX95155 AT5G42800.1 10536025
AT3G55120.1 CDY21246 AT5G42800.1 10536025
AT3G55120.1 CDY52372 AT5G42800.1 10536025
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47033 Canola plastid 75.64 92.19
CDY40202 Canola plastid 75.21 69.84
CDX73402 Canola plastid 74.36 69.32
CDY53696 Canola plastid 58.12 68.34
CDY65002 Canola plastid 65.81 67.84
AT3G55120.1 Thale cress plastid 69.23 65.85
VIT_13s0067g03820.t01 Wine grape extracellular 55.98 55.98
KRG92978 Soybean plastid 51.71 53.07
Solyc05g010310.2.1 Tomato cytosol 47.86 50.45
Solyc05g010320.2.1 Tomato cytosol 47.86 49.56
Zm00001d034635_P001 Maize cytosol, extracellular 48.29 48.92
EER90629 Sorghum cytosol 47.44 48.05
CDY71367 Canola cytosol 19.23 47.37
CDX73401 Canola plastid 61.11 47.04
CDY40203 Canola plastid 55.13 46.91
Zm00001d012972_P001 Maize cytosol 46.15 46.75
TraesCS5A01G475600.1 Wheat golgi, plastid 45.73 46.72
HORVU5Hr1G112670.1 Barley cytosol 44.87 45.45
TraesCS5D01G489000.1 Wheat cytosol 44.87 45.45
TraesCS5B01G488900.1 Wheat golgi 44.44 45.02
Os03t0819600-01 Rice cytosol, plasma membrane 44.44 44.64
GSMUA_Achr4P16830_001 Banana cytosol 41.45 41.1
TraesCS7B01G038200.1 Wheat cytosol 37.61 39.29
CDX70163 Canola cytosol 24.36 27.8
CDX98830 Canola cytosol 23.93 27.32
Protein Annotations
KEGG:00941+5.5.1.6Gene3D:1.10.890.20Gene3D:3.50.70.10MapMan:9.2.2.2.1GO:A0A078C8R3EnsemblPlants:CDX72554
ProteinID:CDX72554ProteinID:CDX72554.1InterPro:Chalcone_isomeraseInterPro:Chalcone_isomerase_3-sandInterPro:Chalcone_isomerase_bundle_sfInterPro:Chalcone_isomerase_sf
GO:GO:0003674GO:GO:0003824GO:GO:0016872EnsemblPlantsGene:GSBRNA2T00100091001InterPro:IPR016088InterPro:IPR016089
PFAM:PF02431PANTHER:PTHR28039PANTHER:PTHR28039:SF8MetaCyc:PWY-2002MetaCyc:PWY-5059MetaCyc:PWY-6325
MetaCyc:PWY-6787MetaCyc:PWY-7397SUPFAM:SSF54626UniPathway:UPA00154UniParc:UPI0004EEFE92:
Description
BnaC07g45760D
Coordinates
chrLK031796:+:1836943..1838233
Molecular Weight (calculated)
25563.8 Da
IEP (calculated)
4.629
GRAVY (calculated)
0.115
Length
234 amino acids
Sequence
(BLAST)
001: MFSSGSQLQL PSVTNLQVDS VNFPPSVISP ASSNPLFLGG AGVRGIDVLG DKFVIITFFG VYLDPVAVPL LSVKWKGKTT EELMESVPFF REVVTGTFEK
101: FIKVTMRVPL PGQLYSQTVT GTFVEIWKSL GIYTDSEAKA VERFLEVFKD EKFPRGASIL FALSPEGSLT IAFSKDDNIP ETGKAVIENK LLAEAVLEFI
201: IGTEAASPRT RLSVAERLSQ LMNSDKVEED ATKT
Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)
001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
Arabidopsis Description
CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.