Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G488900.1 | Wheat | golgi | 46.43 | 45.02 |
| VIT_13s0067g03820.t01 | Wine grape | extracellular | 46.43 | 44.44 |
| Solyc05g010310.2.1 | Tomato | cytosol | 43.3 | 43.69 |
| Solyc05g010320.2.1 | Tomato | cytosol | 43.3 | 42.92 |
| GSMUA_Achr4P16830_001 | Banana | cytosol | 44.64 | 42.37 |
| AT3G55120.1 | Thale cress | plastid | 45.98 | 41.87 |
| KRG92978 | Soybean | plastid | 41.96 | 41.23 |
| CDX73402 | Canola | plastid | 45.54 | 40.64 |
| Bra007142.1-P | Field mustard | plastid | 45.09 | 40.24 |
| CDY40202 | Canola | plastid | 45.09 | 40.08 |
| CDY53696 | Canola | plastid | 35.27 | 39.7 |
| AT5G66220.1 | Thale cress | cytosol | 30.36 | 39.08 |
| CDX72554 | Canola | plastid | 39.29 | 37.61 |
| CDY65002 | Canola | plastid | 37.05 | 36.56 |
| Bra003209.1-P | Field mustard | plastid | 37.05 | 36.56 |
| Bra017728.1-P | Field mustard | plastid | 31.7 | 36.04 |
| CDY47033 | Canola | plastid | 29.91 | 34.9 |
| Bra039362.1-P | Field mustard | cytosol | 13.39 | 32.97 |
| CDY71367 | Canola | cytosol | 13.84 | 32.63 |
| CDX73401 | Canola | plastid | 41.07 | 30.26 |
| Bra007145.1-P | Field mustard | plastid | 39.29 | 29.43 |
| CDY40203 | Canola | plastid | 35.71 | 29.09 |
| TraesCS5B01G145800.1 | Wheat | cytosol, golgi | 21.43 | 22.12 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G038200.1 | EnsemblPlantsGene:TraesCS7B01G038200 | Gene3D:1.10.890.20 | Gene3D:3.50.70.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016872 | InterPro:Chalcone_isomerase | InterPro:Chalcone_isomerase_3-sand | InterPro:Chalcone_isomerase_bundle_sf | InterPro:Chalcone_isomerase_sf | InterPro:IPR016088 |
| InterPro:IPR016089 | KEGG:00941+5.5.1.6 | PANTHER:PTHR28039 | PANTHER:PTHR28039:SF8 | PFAM:PF02431 | SUPFAM:SSF54626 |
| MapMan:9.2.2.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:37093695..37094639
Molecular Weight (calculated)
24184.5 Da
IEP (calculated)
5.087
GRAVY (calculated)
-0.091
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTTFPAGI TDMEVGRVVF GASATPPHSS KILFLGGAGE RIGPRHGTLK LVTVIGVYLE QSAVPFLTLR WQGKPAEELA RSADFFRDIV AGPFDKFTQV
101: TLVDTLTGQE YSDKVTENCV NIWKSSEHYS VDEGHGSAAT SELKGIFYPA SFPTGSTIFF THSADGVLQV AFSDDTKVPE QESGRVDSRA LSEAVLESII
201: GDNGVSPLAR RSLAFRLCGL INHK
101: TLVDTLTGQE YSDKVTENCV NIWKSSEHYS VDEGHGSAAT SELKGIFYPA SFPTGSTIFF THSADGVLQV AFSDDTKVPE QESGRVDSRA LSEAVLESII
201: GDNGVSPLAR RSLAFRLCGL INHK
001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN
Arabidopsis Description
CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.