Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G224600.1 | Wheat | cytosol, extracellular, plastid | 96.61 | 96.61 |
| HORVU3Hr1G056560.2 | Barley | cytosol | 93.79 | 93.79 |
| TraesCS3B01G257900.2 | Wheat | plastid | 97.18 | 89.12 |
| EES01135 | Sorghum | cytosol | 79.66 | 80.57 |
| Zm00001d011438_P001 | Maize | extracellular | 76.27 | 74.79 |
| EES19023 | Sorghum | cytosol, peroxisome, plastid | 76.27 | 74.59 |
| Zm00001d044122_P001 | Maize | plastid | 75.14 | 74.51 |
| EES04562 | Sorghum | plastid | 75.71 | 74.03 |
| Os01t0633500-00 | Rice | cytosol, mitochondrion, plasma membrane, plastid | 65.82 | 73.5 |
| EES01136 | Sorghum | plastid | 74.86 | 68.12 |
| GSMUA_Achr3P31110_001 | Banana | cytosol, endoplasmic reticulum, plastid | 67.23 | 66.85 |
| GSMUA_Achr4P10640_001 | Banana | cytosol | 64.97 | 65.34 |
| KRH15169 | Soybean | plastid | 60.73 | 61.78 |
| KRH05848 | Soybean | plastid | 59.6 | 59.6 |
| VIT_18s0001g12800.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane, plastid | 61.86 | 58.4 |
| VIT_04s0023g02090.t01 | Wine grape | cytosol | 26.55 | 58.39 |
| KRH71611 | Soybean | nucleus | 53.67 | 56.05 |
| AT5G42800.1 | Thale cress | cytosol | 59.6 | 55.24 |
| Bra027457.1-P | Field mustard | cytosol | 59.32 | 54.55 |
| CDY52372 | Canola | cytosol | 59.32 | 54.55 |
| CDX95155 | Canola | cytosol | 59.04 | 54.29 |
| Solyc02g085020.2.1 | Tomato | cytosol | 57.63 | 53.83 |
| PGSC0003DMT400009287 | Potato | cytosol | 57.91 | 53.66 |
| CDY21246 | Canola | cytosol | 33.33 | 48.36 |
| KRH05851 | Soybean | extracellular | 16.67 | 47.58 |
| TraesCS2A01G481700.1 | Wheat | cytosol | 19.21 | 41.72 |
| TraesCS2A01G481800.1 | Wheat | cytosol | 30.79 | 38.52 |
| TraesCS2A01G481300.1 | Wheat | mitochondrion | 37.29 | 38.48 |
| TraesCS2A01G481900.1 | Wheat | cytosol | 36.72 | 38.46 |
| TraesCS2A01G482300.1 | Wheat | plastid | 29.1 | 37.87 |
| TraesCS2A01G579500.1 | Wheat | cytosol | 35.88 | 37.03 |
| TraesCS2A01G481500.1 | Wheat | cytosol | 35.31 | 36.98 |
| TraesCS2A01G481200.1 | Wheat | cytosol, mitochondrion, plastid | 35.59 | 36.84 |
| TraesCS2A01G579300.1 | Wheat | cytosol | 35.59 | 36.73 |
| TraesCS2A01G579400.1 | Wheat | cytosol | 35.59 | 36.73 |
| TraesCS2A01G579600.1 | Wheat | cytosol | 35.59 | 36.73 |
| TraesCS2A01G482100.1 | Wheat | cytosol | 35.03 | 36.69 |
| TraesCS7A01G450700.1 | Wheat | cytosol, plastid | 36.44 | 36.34 |
| TraesCS2A01G579200.1 | Wheat | cytosol | 35.03 | 36.15 |
| TraesCS2A01G482200.1 | Wheat | peroxisome | 33.9 | 35.5 |
| TraesCS2A01G483100.1 | Wheat | cytosol | 30.79 | 34.94 |
| TraesCS2A01G481400.1 | Wheat | mitochondrion | 21.75 | 33.62 |
| TraesCS5A01G554500.1 | Wheat | endoplasmic reticulum | 24.86 | 32.96 |
| TraesCS2A01G177400.1 | Wheat | mitochondrion | 28.25 | 29.67 |
| TraesCS2A01G177500.1 | Wheat | mitochondrion | 27.97 | 29.55 |
| TraesCS7A01G505200.1 | Wheat | peroxisome | 29.66 | 29.17 |
| TraesCS2A01G177200.1 | Wheat | mitochondrion | 27.68 | 28.91 |
| TraesCS2A01G174100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 26.84 | 27.3 |
| TraesCS7A01G505300.1 | Wheat | cytosol | 16.38 | 21.8 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G226600.1 | EnsemblPlantsGene:TraesCS3A01G226600 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0050662 | InterPro:Epimerase_deHydtase | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF276 | PFAM:PF01370 |
| SEG:seg | SUPFAM:SSF51735 | TIGR:cd08958 | MapMan:9.2.2.9.1 | : | : |
Description
No Description!
Coordinates
chr3A:-:423967370..423968670
Molecular Weight (calculated)
38521.1 Da
IEP (calculated)
5.106
GRAVY (calculated)
-0.089
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSKGPVVV TGASGFVGSW LVMKLLQAGY TVRATVRDPA NVEKNKPLLE LPGAKERLSI WKADLSDQGS FDDAIAGCTG VFHVATPMDF DSQDPENEVI
101: KPTVEGMLSI MRACKEAGTV KRIVFTSSAG SVNIEERQRP AYDQDNWSDI DFCRRVKMTG WMYFVSKALA EKAAMEYASE NGLDFISIIP TLVVGTFLSA
201: GMPPSLVTAL ALITGNEAHY SILKQVQLVH LDDLCDAMTF LFEHPEANGR YICSSHDATI HGLATMLRDR FPEYRIPHKF PGVDDDLQPI HFSSRKLLDH
301: GFSFRYTAED MFDAAIRTCR EKGLIPLGDA PPPAAAGKLG ALAAGEGQAI GAET
101: KPTVEGMLSI MRACKEAGTV KRIVFTSSAG SVNIEERQRP AYDQDNWSDI DFCRRVKMTG WMYFVSKALA EKAAMEYASE NGLDFISIIP TLVVGTFLSA
201: GMPPSLVTAL ALITGNEAHY SILKQVQLVH LDDLCDAMTF LFEHPEANGR YICSSHDATI HGLATMLRDR FPEYRIPHKF PGVDDDLQPI HFSSRKLLDH
301: GFSFRYTAED MFDAAIRTCR EKGLIPLGDA PPPAAAGKLG ALAAGEGQAI GAET
001: MVSQKETVCV TGASGFIGSW LVMRLLERGY FVRATVRDPG NLKKVQHLLD LPNAKTLLTL WKADLSEEGS YDDAINGCDG VFHVATPMDF ESKDPENEVI
101: KPTVNGMLGI MKACVKAKTV RRFVFTSSAG TVNVEEHQKN VYDENDWSDL EFIMSKKMTG WMYFVSKTLA EKAAWDFAEE KGLDFISIIP TLVVGPFITT
201: SMPPSLITAL SPITRNEAHY SIIRQGQYVH LDDLCNAHIF LYEQAAAKGR YICSSHDATI LTISKFLRPK YPEYNVPSTF EGVDENLKSI EFSSKKLTDM
301: GFNFKYSLEE MFIESIETCR QKGFLPVSLS YQSISEIKTK NENIDVKTGD GLTDGMKPCN KTETGITGER TDAPMLAQQM CA
101: KPTVNGMLGI MKACVKAKTV RRFVFTSSAG TVNVEEHQKN VYDENDWSDL EFIMSKKMTG WMYFVSKTLA EKAAWDFAEE KGLDFISIIP TLVVGPFITT
201: SMPPSLITAL SPITRNEAHY SIIRQGQYVH LDDLCNAHIF LYEQAAAKGR YICSSHDATI LTISKFLRPK YPEYNVPSTF EGVDENLKSI EFSSKKLTDM
301: GFNFKYSLEE MFIESIETCR QKGFLPVSLS YQSISEIKTK NENIDVKTGD GLTDGMKPCN KTETGITGER TDAPMLAQQM CA
Arabidopsis Description
DFRADihydroflavonol reductase [Source:UniProtKB/TrEMBL;Acc:B1GV15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.