Factsheet for Bra017728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006224.1-P
Bra008792.1-P
Bra012862.1-P
Bra014831.1-P
Bra023441.1-P
Bra027457.1-P
Bra036307.1-P
Bra036828.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	Bra012862.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra014831.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra036828.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra006224.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra008792.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra023441.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra036307.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra027457.1-P	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47033	Canola	plastid	95.94	98.44
Bra003209.1-P	Field mustard	plastid	76.14	66.08
Bra007142.1-P	Field mustard	plastid	78.17	61.35
AT3G55120.1	Thale cress	plastid	70.05	56.1
VIT_13s0067g03820.t01	Wine grape	extracellular	58.38	49.15
KRG92978	Soybean	plastid	52.28	45.18
Solyc05g010310.2.1	Tomato	cytosol	48.73	43.24
Solyc05g010320.2.1	Tomato	cytosol	48.73	42.48
Zm00001d034635_P001	Maize	cytosol, extracellular	48.73	41.56
EER90629	Sorghum	cytosol	47.72	40.69
Bra007145.1-P	Field mustard	plastid	61.42	40.47
Zm00001d012972_P001	Maize	cytosol	46.19	39.39
TraesCS5A01G475600.1	Wheat	golgi, plastid	45.69	39.3
HORVU5Hr1G112670.1	Barley	cytosol	45.18	38.53
TraesCS5B01G488900.1	Wheat	golgi	44.67	38.1
TraesCS5D01G489000.1	Wheat	cytosol	44.67	38.1
Os03t0819600-01	Rice	cytosol, plasma membrane	44.67	37.77
GSMUA_Achr4P16830_001	Banana	cytosol	42.13	35.17
TraesCS7B01G038200.1	Wheat	cytosol	36.04	31.7
Bra039362.1-P	Field mustard	cytosol	12.69	27.47
Bra009101.1-P	Field mustard	cytosol	24.87	23.9

Protein Annotations

EnsemblPlants:Bra017728.1	EnsemblPlants:Bra017728.1-P	EnsemblPlantsGene:Bra017728	Gene3D:1.10.890.20	Gene3D:3.50.70.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf
InterPro:IPR016088	InterPro:IPR016089	KEGG:00941+5.5.1.6	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	PFAM:PF02431
SUPFAM:SSF54626	UniParc:UPI0002540BC5	UniProt:M4DMJ3	MapMan:9.2.2.2.1	:	:

Description

AT3G55120 (E=4e-073) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase

Coordinates

chrA03:+:30058206..30059397

Molecular Weight (calculated)

21430.1 Da

IEP (calculated)

5.326

GRAVY (calculated)

0.238

Length

197 amino acids

Sequence
(BLAST)

001: MFSSGSQLPL PSVTNLQVDS VNFPPSVISP ASSNPLFLGG AGVRGIDVLG DKFVIITFFG VYLDPVAVPL LSVKWKGKTT EELMESVPFF REVVTGTFEK
101: LIKVMMRVPL PGQLYSQIIT GTSVKIWKSL GIYTYSEAKA VERFLEVFKD EKFPRGASIL FALSPEGSLT IAFSKDDSIP ETGKAVIENK LLTEASS

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.