Factsheet for GSMUA_Achr4P16830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P02770_001
GSMUA_Achr4P24540_001
GSMUA_Achr6P10910_001
GSMUA_Achr6P16370_001
GSMUA_Achr7P16780_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	GSMUA_Achr2P02770_001	AT3G51240.1	10536025
AT3G55120.1	GSMUA_Achr7P16780_001	AT3G51240.1	10536025
AT3G55120.1	GSMUA_Achr10P...	AT5G13930.1	10536025
AT3G55120.1	GSMUA_Achr10P...	AT5G13930.1	10536025
AT3G55120.1	GSMUA_Achr6P10910_001	AT5G13930.1	10536025
AT3G55120.1	GSMUA_Achr6P16370_001	AT5G13930.1	10536025
AT3G55120.1	GSMUA_Achr4P24540_001	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034635_P001	Maize	cytosol, extracellular	58.05	59.31
EER90629	Sorghum	cytosol	58.05	59.31
Os03t0819600-01	Rice	cytosol, plasma membrane	58.05	58.8
Zm00001d012972_P001	Maize	cytosol	56.78	58.01
Solyc05g010320.2.1	Tomato	cytosol	55.08	57.52
TraesCS5A01G475600.1	Wheat	golgi, plastid	55.51	57.21
HORVU5Hr1G112670.1	Barley	cytosol	55.93	57.14
TraesCS5D01G489000.1	Wheat	cytosol	55.08	56.28
VIT_13s0067g03820.t01	Wine grape	extracellular	55.08	55.56
Solyc05g010310.2.1	Tomato	cytosol	52.12	55.41
TraesCS5B01G488900.1	Wheat	golgi	52.54	53.68
AT3G55120.1	Thale cress	plastid	52.12	50.0
KRG92978	Soybean	plastid	47.03	48.68
CDX73402	Canola	plastid	50.0	47.01
Bra007142.1-P	Field mustard	plastid	50.0	47.01
CDY40202	Canola	plastid	50.0	46.83
TraesCS7B01G038200.1	Wheat	cytosol	42.37	44.64
AT5G66220.1	Thale cress	cytosol	32.63	44.25
CDY53696	Canola	plastid	37.29	44.22
CDY65002	Canola	plastid	41.53	43.17
Bra003209.1-P	Field mustard	plastid	41.1	42.73
Bra017728.1-P	Field mustard	plastid	35.17	42.13
CDX72554	Canola	plastid	41.1	41.45
Bra039362.1-P	Field mustard	cytosol	15.68	40.66
CDY47033	Canola	plastid	32.63	40.1
CDY71367	Canola	cytosol	14.83	36.84
Bra007145.1-P	Field mustard	plastid	43.22	34.11
CDX73401	Canola	plastid	43.64	33.88
CDY40203	Canola	plastid	39.41	33.82
GSMUA_Achr11P...	Banana	cytosol	27.12	22.3

Protein Annotations

EnsemblPlants:GSMUA_Achr4P16830_001	EnsemblPlants:GSMUA_Achr4T16830_001	EnsemblPlantsGene:GSMUA_Achr4G16830_001	Gene3D:1.10.890.20	Gene3D:3.50.70.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf
InterPro:IPR016088	InterPro:IPR016089	KEGG:00941+5.5.1.6	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	PFAM:PF02431
SEG:seg	SUPFAM:SSF54626	UniParc:UPI0002948740	UniProt:M0SPJ7	MapMan:9.2.2.2.1	:

Description

Chalcone--flavonone isomerase [Source:GMGC_GENE;Acc:GSMUA_Achr4G16830_001]

Coordinates

chr4:-:15371001..15372308

Molecular Weight (calculated)

25004.9 Da

IEP (calculated)

4.720

GRAVY (calculated)

0.047

Length

236 amino acids

Sequence
(BLAST)

001: MSGGTGSPLP MLEVEGVVFP PVVTPPGSTK AHFLGGAGVR GLEIEGRFVA FTAIGVYLED AAVQSLASKW KGKSADELDG AVEFFRDIFG GPFEKFTRVT
101: LLKPLTGQQY AEKVSENCTA QWKAAGVYAE ADGAALEQFK EAFRAETFPP GSSILFTHAP SDSLLIAFSK DGSMPEAGIA MIQNQPLSQG ILESIIGENG
201: VSPGAKRSLA LRFSELLKQH CEAEETKLVN PVAVIV

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.