Factsheet for Zm00001d007403_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001960_P001
Zm00001d011438_P001
Zm00001d012972_P001
Zm00001d018181_P001
Zm00001d018184_P001
Zm00001d034635_P001
Zm00001d044122_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	Zm00001d001960_P001	AT3G51240.1	10536025
AT5G13930.1	Zm00001d012972_P001	AT3G55120.1	10536025
AT5G13930.1	Zm00001d034635_P001	AT3G55120.1	10536025
AT5G13930.1	Zm00001d018181_P001	AT5G08640.1	18467451
AT5G13930.1	Zm00001d018184_P001	AT5G08640.1	18467451
AT5G13930.1	Zm00001d018181_P001	AT5G08640.1	21669202
AT5G13930.1	Zm00001d018184_P001	AT5G08640.1	21669202
AT5G13930.1	Zm00001d011438_P001	AT5G42800.1	10536025
AT5G13930.1	Zm00001d044122_P001	AT5G42800.1	10536025
AT5G13930.1	Zm00001d011438_P001	AT5G42800.1	21669202
AT5G13930.1	Zm00001d044122_P001	AT5G42800.1	21669202
AT5G13930.1	Zm00001d018181_P001	AT5G63590.1	18467451
AT5G13930.1	Zm00001d018184_P001	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052673_P001	Maize	cytosol	97.01	97.25
EES09865	Sorghum	cytosol	92.52	92.52
KXG29016	Sorghum	cytosol	92.27	92.27
EES09863	Sorghum	cytosol	92.27	92.27
EES09862	Sorghum	cytosol	92.27	92.27
EES09860	Sorghum	cytosol	92.27	92.27
EES09859	Sorghum	cytosol	92.27	92.27
EES09858	Sorghum	cytosol	92.27	92.27
EES08604	Sorghum	cytosol	92.27	92.27
EES09864	Sorghum	cytosol	91.77	92.0
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	89.78	90.45
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	68.08	87.22
KRH42776	Soybean	cytosol	54.36	85.49
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	69.33	84.76
VIT_14s0068g00930.t01	Wine grape	cytosol	82.29	83.97
VIT_14s0068g00920.t01	Wine grape	cytosol	82.04	83.72
KRH42780	Soybean	cytosol	80.8	83.51
KRH42778	Soybean	cytosol	80.8	83.51
KRH42759	Soybean	cytosol	80.8	83.51
GSMUA_Achr10P...	Banana	cytosol	67.33	83.33
Solyc09g091510.2.1	Tomato	cytosol, extracellular	80.8	83.29
PGSC0003DMT400076178	Potato	cytosol	80.8	83.29
KRH58872	Soybean	cytosol	80.55	83.25
KRH42783	Soybean	cytosol	80.55	83.25
KRH42775	Soybean	cytosol	80.55	83.25
KRH42758	Soybean	cytosol	80.55	83.25
KRH42757	Soybean	cytosol	80.55	83.25
CDX69618	Canola	cytosol	81.8	83.04
CDX78547	Canola	cytosol	81.55	82.99
CDX91090	Canola	cytosol	81.8	82.83
Bra008792.1-P	Field mustard	cytosol	81.55	82.78
VIT_05s0136g00260.t01	Wine grape	cytosol	80.3	82.78
KRH42760	Soybean	cytosol	80.05	82.73
KRG94730	Soybean	cytosol	80.55	82.61
CDX70528	Canola	cytosol	81.55	82.58
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	80.05	82.52
KRH75544	Soybean	cytosol	79.8	82.47
CDY09836	Canola	cytosol	81.05	82.28
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	79.8	82.26
KRH37579	Soybean	cytosol	79.55	82.22
AT5G13930.1	Thale cress	cytosol	80.8	82.03
KRH71115	Soybean	cytosol	79.3	81.96
Bra006224.1-P	Field mustard	cytosol	80.8	81.82
Bra023441.1-P	Field mustard	cytosol	80.05	81.47
KRH77699	Soybean	endoplasmic reticulum	77.81	80.21
KRH27737	Soybean	cytosol	77.56	79.95
Bra036307.1-P	Field mustard	cytosol	77.31	78.88
Bra020688.1-P	Field mustard	cytosol	77.31	78.68
CDY51056	Canola	cytosol	77.06	78.43
CDY05664	Canola	cytosol	77.06	78.43
PGSC0003DMT400076179	Potato	cytosol	72.82	77.04
GSMUA_Achr10P...	Banana	mitochondrion	63.84	74.64
CDY07114	Canola	cytosol	76.06	74.39
CDY05666	Canola	mitochondrion	67.08	64.35
Zm00001d000438_P001	Maize	cytosol, mitochondrion	54.86	54.73
Zm00001d021562_P001	Maize	cytosol, mitochondrion	54.86	54.73
Zm00001d040483_P001	Maize	cytosol	38.15	51.52
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	49.63	50.13
Zm00001d040497_P001	Maize	mitochondrion	49.38	50.0
Zm00001d040479_P001	Maize	mitochondrion	49.63	50.0
Zm00001d007717_P001	Maize	mitochondrion, plastid	41.15	47.41
Zm00001d052676_P001	Maize	plastid	50.12	42.58
Zm00001d007400_P001	Maize	cytosol	40.4	38.57
Zm00001d019478_P001	Maize	cytosol	39.15	37.65
Zm00001d032662_P001	Maize	plastid	34.66	35.64
Zm00001d013991_P001	Maize	mitochondrion	35.41	33.73
Zm00001d052675_P002	Maize	plastid	46.38	25.24
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	35.66	21.09

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:100282642	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	UniProt:B6T9S4	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N	EMBL:EU961739	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009813	GO:GO:0016210	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	ProteinID:ONM26748.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451
ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI000182C77C	EnsemblPlantsGene:Zm00001d007403	EnsemblPlants:Zm00001d007403_P001	EnsemblPlants:Zm00001d007403_T001	SEG:seg	:

Description

white pollen1Chalcone synthase WHP1

Coordinates

chr2:-:230953342..230957070

Molecular Weight (calculated)

43328.1 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.067

Length

401 amino acids

Sequence
(BLAST)

001: MAGATVTVDE VRKGQRATGP ATVLAIGTAT PANCVYQADY PDYYFRITKS DHLTDLKEKF KRMCDKSMIR KRYMHLTEEF LSENPSMCAY MAPSLDARQD
101: VVVTEVPKLG KAAAQKAIKE WGQPKSRITH LVFCTTSGVD MPGADYQLTK ALGLRPSVNR LMMYQQGCFA GGTVLRVAKD LAENNRGARV LVVCSEITAV
201: TFRGPSESHL DSLVGQALFG DGAAAVVVGA DPDGRVERPL FQLVSAAQTI LPDSEGAIDG HLREVGLTFH LLKDVPGLIS KNIERALEDA FEPLGISDWN
301: SIFWVAHPGG PAILDQVEAR VGLDKARMRA TRHVLSEYGN MSSACVLFIL DEMRKRSAED GQATTGEGLD WGVLFGFGPG LTVETVVLHS VPITTGAPTA
401: A

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.