Factsheet for Zm00001d000438_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021562_P001	Maize	cytosol, mitochondrion	100.0	100.0
EER99419	Sorghum	cytosol	93.28	92.82
TraesCS6B01G327900.1	Wheat	cytosol	65.42	78.74
TraesCS6A01G298400.1	Wheat	cytosol	78.11	78.3
TraesCS6D01G278200.1	Wheat	cytosol	77.61	77.81
HORVU6Hr1G074060.2	Barley	cytosol	76.87	76.67
Os07t0271500-01	Rice	cytosol	68.91	68.91
Zm00001d040483_P001	Maize	cytosol	43.78	59.26
Zm00001d040497_P001	Maize	mitochondrion	57.21	58.08
Zm00001d040479_P001	Maize	mitochondrion	57.21	57.79
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	54.73	55.42
Zm00001d007403_P001	Maize	cytosol	54.73	54.86
Zm00001d052673_P001	Maize	cytosol	53.98	54.25
Zm00001d007717_P001	Maize	mitochondrion, plastid	46.27	53.45
Zm00001d052676_P001	Maize	plastid	56.97	48.52
Zm00001d007400_P001	Maize	cytosol	50.25	48.1
Zm00001d032662_P001	Maize	plastid	38.56	39.74
Zm00001d019478_P001	Maize	cytosol	39.8	38.37
Zm00001d013991_P001	Maize	mitochondrion	38.31	36.58
Zm00001d052675_P002	Maize	plastid	55.22	30.12
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	43.53	25.81
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.48	0.74

Protein Annotations

EntrezGene:100272924	Gene3D:3.40.47.10	MapMan:50.2.3	UniProt:B4F9D7	EMBL:BT033725	EMBL:BT039792
InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	ProteinID:ONM57515.1
PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF34	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI00017B60A4	EnsemblPlantsGene:Zm00001d000438	EnsemblPlants:Zm00001d000438_P001	EnsemblPlants:Zm00001d000438_T001
SEG:seg	:	:	:	:	:

Description

Type III polyketide synthase B

Coordinates

chrB73V4_ctg190:-:53202..55064

Molecular Weight (calculated)

43008.6 Da

IEP (calculated)

6.011

GRAVY (calculated)

0.025

Length

402 amino acids

Sequence
(BLAST)

001: MGSAWANVRE ICRAQRADGP AAVLAIGTAN PANCVPQDEF PDFYFRATKS DHLTGLKEKF KRVCQKLGVQ KRYLHHTEEL LSAHPEFLDR SSPSLDARLD
101: IVKTAVPELA AQACRKAIAE WGRPAADVTH LVVATNSGAH IPGVDFQLVS LLGLRPTVRR TMLYLNGCSA GAAALRLARD LAENNRGARV LVACAEITVL
201: LFDGPEEGCF QTLVNQGLFG DGAGAVVVGA DPAAPAERPL FEIVSAAQTV IPDSEGVITM HLTKGGYGGN ISTRQVPVLI GDHIERCLTD AFAPLGVGAG
301: WNDLFWDVHP GSSAILDQVD AVLKLKPEKL AASRRVLSEY GNMFGVTVIF VLDELRRRMT NGEEEGAPAE WGVMVAFGPG LTVETMVLHR SGTPAETKLG
401: EA

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.