Factsheet for Zm00001d007717_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040479_P001	Maize	mitochondrion	80.75	70.6
Zm00001d040497_P001	Maize	mitochondrion	80.17	70.45
Zm00001d040483_P001	Maize	cytosol	55.17	64.65
TraesCS6B01G245200.1	Wheat	mitochondrion	58.33	60.42
HORVU6Hr1G055000.1	Barley	cytosol, mitochondrion	62.36	54.8
TraesCS6A01G215600.1	Wheat	mitochondrion	62.64	54.77
TraesCS4B01G021600.1	Wheat	cytosol	60.63	52.62
TraesCS5B01G487700.1	Wheat	cytosol	58.91	51.77
TraesCS6D01G197900.1	Wheat	cytosol	43.1	51.72
TraesCS4A01G292500.1	Wheat	cytosol	58.62	51.26
HORVU4Hr1G003250.1	Barley	cytosol	61.49	51.07
EES15556	Sorghum	cytosol, mitochondrion	52.59	48.03
Zm00001d000438_P001	Maize	cytosol, mitochondrion	53.45	46.27
Zm00001d021562_P001	Maize	cytosol, mitochondrion	53.45	46.27
OQU86627	Sorghum	mitochondrion	49.14	45.97
Zm00001d007403_P001	Maize	cytosol	47.41	41.15
Zm00001d052673_P001	Maize	cytosol	47.13	41.0
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	46.26	40.55
Zm00001d052676_P001	Maize	plastid	52.59	38.77
Zm00001d007400_P001	Maize	cytosol	42.53	35.24
Zm00001d032662_P001	Maize	plastid	33.33	29.74
Zm00001d013991_P001	Maize	mitochondrion	33.62	27.79
Zm00001d019478_P001	Maize	cytosol	32.76	27.34
Zm00001d052675_P002	Maize	plastid	47.99	22.66
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	33.91	17.4
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	2.3	0.42

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	UniProt:A0A1D6F8B4	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	ProteinID:ONM27436.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451
PANTHER:PTHR11877	PANTHER:PTHR11877:SF29	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000222163A
EnsemblPlantsGene:Zm00001d007717	EnsemblPlants:Zm00001d007717_P001	EnsemblPlants:Zm00001d007717_T001	SEG:seg	:	:

Description

Type III polyketide synthase B

Coordinates

chr2:+:238098755..238102382

Molecular Weight (calculated)

37762.3 Da

IEP (calculated)

8.405

GRAVY (calculated)

-0.153

Length

348 amino acids

Sequence
(BLAST)

001: MTSPLLMGNQ IIATRPAVVR CSDRRRELRA DGPATVLAIG TANPPNCVRQ EDYADYYFRI TKSEHLTGLK DKLKRICHKS AIKKRYFHHT EELLLGHPAF
101: IDRSMPSLDE RQAIMATAVP ELAAAAAADA IAEWGRPATE ITHLVVTTYS GAHMPGVDWL VASLLGLRPT VRRTMLYMNG CSSGCAALRL AKDMAENNRG
201: ARVLVACAEL TLMVFRAPHE AQVDTLITQS LFGDGAGAVV VGADPVSVEE PEFEMVSASQ TMIPESKQVA SGQLSEDGLR FHPSREIPSL VRENVEQCMV
301: DALSRRSTSA AAGTTSSGRS IRVAALSWTA SRRGSGWNRT SWQRAAGC

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.