Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G197900.1 | Wheat | cytosol | 72.11 | 98.97 |
| TraesCS6B01G245200.1 | Wheat | mitochondrion | 81.16 | 96.13 |
| HORVU6Hr1G055000.1 | Barley | cytosol, mitochondrion | 95.23 | 95.71 |
| TraesCS4A01G292500.1 | Wheat | cytosol | 77.64 | 77.64 |
| Zm00001d040483_P001 | Maize | cytosol | 54.52 | 73.06 |
| Zm00001d040479_P001 | Maize | mitochondrion | 70.6 | 70.6 |
| Zm00001d040497_P001 | Maize | mitochondrion | 70.1 | 70.45 |
| Os11t0529125-00 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 13.32 | 69.74 |
| Zm00001d007717_P001 | Maize | mitochondrion, plastid | 54.77 | 62.64 |
| EES15556 | Sorghum | cytosol, mitochondrion | 58.79 | 61.42 |
| TraesCS5A01G379400.1 | Wheat | mitochondrion | 57.79 | 60.05 |
| TraesCS5A01G379500.1 | Wheat | cytosol, mitochondrion | 58.54 | 59.9 |
| TraesCS6A01G298400.1 | Wheat | cytosol | 59.55 | 59.1 |
| TraesCS2A01G021700.1 | Wheat | cytosol | 59.3 | 59.0 |
| OQU86627 | Sorghum | mitochondrion | 55.03 | 58.87 |
| TraesCS4A01G436200.1 | Wheat | cytosol, plastid | 56.78 | 57.22 |
| TraesCS5A01G379600.1 | Wheat | cytosol | 49.5 | 57.1 |
| TraesCS4A01G437600.1 | Wheat | cytosol | 57.04 | 57.04 |
| TraesCS4A01G436400.1 | Wheat | cytosol, plastid | 56.53 | 56.96 |
| TraesCS4A01G438100.1 | Wheat | cytosol | 56.53 | 56.96 |
| TraesCS4A01G438200.1 | Wheat | cytosol | 56.28 | 56.71 |
| TraesCS7A01G093900.1 | Wheat | mitochondrion | 54.02 | 54.57 |
| TraesCS4A01G392800.1 | Wheat | cytosol, mitochondrion | 46.48 | 53.94 |
| TraesCS5A01G526900.1 | Wheat | cytosol, mitochondrion | 54.02 | 53.88 |
| TraesCS2A01G035300.1 | Wheat | cytosol | 53.27 | 53.81 |
| TraesCS2A01G025700.1 | Wheat | cytosol, golgi | 52.76 | 53.3 |
| TraesCS2A01G025600.1 | Wheat | cytosol | 52.76 | 53.3 |
| TraesCS2A01G025500.1 | Wheat | cytosol | 52.51 | 53.05 |
| TraesCS2A01G014800.1 | Wheat | cytosol | 52.01 | 52.54 |
| TraesCS2A01G527700.2 | Wheat | cytosol | 52.51 | 52.51 |
| TraesCS4A01G437900.1 | Wheat | unclear | 57.54 | 52.4 |
| TraesCS6A01G015300.1 | Wheat | cytosol | 51.76 | 51.12 |
| TraesCS1A01G032100.1 | Wheat | cytosol | 50.25 | 50.63 |
| TraesCS6A01G015500.1 | Wheat | cytosol, plastid | 51.76 | 50.49 |
| TraesCS1A01G032300.1 | Wheat | cytosol | 49.75 | 49.75 |
| TraesCS1A01G160300.1 | Wheat | cytosol | 39.45 | 40.26 |
| TraesCS5A01G002900.1 | Wheat | cytosol | 38.69 | 36.49 |
| VIT_12s0059g01780.t01 | Wine grape | extracellular, mitochondrion, nucleus | 3.27 | 0.69 |
Protein Annotations
| Gene3D:3.40.47.10 | MapMan:50.2.3 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_N | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016740 | GO:GO:0016747 | InterPro:IPR016039 |
| PFAM:PF00195 | PFAM:PF02797 | PIRSF:PIRSF000451 | PANTHER:PTHR11877 | PANTHER:PTHR11877:SF29 | InterPro:Polyketide_synthase_type-III |
| SUPFAM:SSF53901 | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS6A01G215600 | EnsemblPlants:TraesCS6A01G215600.1 | TIGR:cd00831 | SEG:seg |
Description
No Description!
Coordinates
chr6A:+:397212757..397214063
Molecular Weight (calculated)
42728.7 Da
IEP (calculated)
7.388
GRAVY (calculated)
0.036
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLGNLTAS PTAAIIRKMR QAQRADGPAS VLAIGTANPA NCVRQDEYAD YYFRVTQKQH LTKLKSKLNR ICDRSAIKKR YFHHTEELLQ HHPEFIDRTL
101: PSLDARMDIA ATAVPDLAAA AAGKAIAEWG RPAADITHLV VSTYSGAHMP GVDLRLASLL GLDPSVRRTM LYLNGCSSGS AALRVAKDIA ENNRGARVLV
201: ACAELTLILF RAPDEAHVDT IIMQALFGDG AAAVIVGAEP DASAERPIFE MVAASQSVIP ESTHGAVGRL REDGLVFNPS FEMPALIREN IEQCMADAVG
301: PLGLSGGWND LFWAVHPGGR AILDSVEAGL RLEPKKLTAS RHVLSEYGNM SGPTVIFVLD EIRRRREHVV GRHGLGVLLG LGPGVTVETM VLRAACGS
101: PSLDARMDIA ATAVPDLAAA AAGKAIAEWG RPAADITHLV VSTYSGAHMP GVDLRLASLL GLDPSVRRTM LYLNGCSSGS AALRVAKDIA ENNRGARVLV
201: ACAELTLILF RAPDEAHVDT IIMQALFGDG AAAVIVGAEP DASAERPIFE MVAASQSVIP ESTHGAVGRL REDGLVFNPS FEMPALIREN IEQCMADAVG
301: PLGLSGGWND LFWAVHPGGR AILDSVEAGL RLEPKKLTAS RHVLSEYGNM SGPTVIFVLD EIRRRREHVV GRHGLGVLLG LGPGVTVETM VLRAACGS
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
Arabidopsis Description
PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.