Factsheet for TraesCS4A01G437900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G436400.1	Wheat	cytosol, plastid	85.58	94.68
TraesCS4A01G436200.1	Wheat	cytosol, plastid	85.58	94.68
TraesCS4A01G438100.1	Wheat	cytosol	84.44	93.42
TraesCS7D01G046500.1	Wheat	unclear	84.21	93.16
TraesCS4A01G438200.1	Wheat	cytosol	83.98	92.91
TraesCS7D01G046700.1	Wheat	cytosol, mitochondrion	82.61	91.39
HORVU7Hr1G009190.1	Barley	cytosol	77.8	88.08
TraesCS4A01G437600.1	Wheat	cytosol	69.57	76.38
TraesCS2A01G021700.1	Wheat	cytosol	60.18	65.75
TraesCS2A01G014800.1	Wheat	cytosol	54.69	60.66
EER95816	Sorghum	cytosol	59.04	60.0
TraesCS7A01G093900.1	Wheat	mitochondrion	53.78	59.64
TraesCS6A01G298400.1	Wheat	cytosol	54.23	59.1
TraesCS4A01G392800.1	Wheat	cytosol, mitochondrion	45.54	58.02
TraesCS5A01G379400.1	Wheat	mitochondrion	50.57	57.7
TraesCS5A01G379500.1	Wheat	cytosol, mitochondrion	51.26	57.58
TraesCS6A01G215600.1	Wheat	mitochondrion	52.4	57.54
TraesCS4A01G292500.1	Wheat	cytosol	50.34	55.28
TraesCS5A01G379600.1	Wheat	cytosol	43.25	54.78
TraesCS5A01G526900.1	Wheat	cytosol, mitochondrion	46.91	51.38
TraesCS6A01G015300.1	Wheat	cytosol	46.0	49.88
TraesCS6A01G015500.1	Wheat	cytosol, plastid	46.45	49.75
TraesCS2A01G035300.1	Wheat	cytosol	43.94	48.73
TraesCS2A01G025600.1	Wheat	cytosol	43.94	48.73
TraesCS2A01G025500.1	Wheat	cytosol	43.71	48.48
TraesCS2A01G025700.1	Wheat	cytosol, golgi	43.48	48.22
TraesCS2A01G527700.2	Wheat	cytosol	43.25	47.49
TraesCS1A01G032100.1	Wheat	cytosol	41.19	45.57
TraesCS1A01G032300.1	Wheat	cytosol	41.19	45.23
TraesCS1A01G160300.1	Wheat	cytosol	32.27	36.15
TraesCS5A01G002900.1	Wheat	cytosol	32.27	33.41
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.43	0.79

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016747	InterPro:IPR016039
PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF34	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	EnsemblPlantsGene:TraesCS4A01G437900	EnsemblPlants:TraesCS4A01G437900.1	TIGR:cd00831	SEG:seg

Description

No Description!

Coordinates

chr4A:+:707487289..707488769

Molecular Weight (calculated)

46171.6 Da

IEP (calculated)

6.298

GRAVY (calculated)

0.136

Length

437 amino acids

Sequence
(BLAST)

001: MGHEPCPGTS LNTCRLLPSP NAHKSFDQPL ALFALFFIRK AAMASSSSIP ATTLGEIRVA QRADGPAAVL AIGTANPPHC VPQEDYPDYY FSVTKSDHLT
101: DLKRTFAKLC GMTGIGRRFF HHTDELLATH LGLSLDARLD VVATAAPELA ASAAANAIAE WGRPAGDITH LVVSTNAGSH APGADVRLVS LLGLRHDVLR
201: TVLQLNGCAS GCAALRLAKD LAENNRGARV LVACVELTIT AFRGPNEADS FDTLIPQGLF GDGAGAVIVG AEPYVHERPL FEMVSASQYV IPDTEHMLTM
301: QLRSGGIGGT IATGLPRLAA GIVEQCLLDA FGDRLAGMGG VVEWNNLFWA VHPGSSAMLD HIVGALRLAP GKLAASRTVV REYGNMLGAT VIFVLDEVRR
401: QREDPEGEGA GHDKGWGVMM GFGPGFTVET MLLHAAT

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.