Factsheet for Zm00001d040479_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040483_P001	Maize	cytosol	71.11	95.29
Zm00001d040497_P001	Maize	mitochondrion	94.47	94.95
Zm00001d007717_P001	Maize	mitochondrion, plastid	70.6	80.75
TraesCS6D01G197900.1	Wheat	cytosol	53.77	73.79
TraesCS6A01G215600.1	Wheat	mitochondrion	70.6	70.6
HORVU6Hr1G055000.1	Barley	cytosol, mitochondrion	69.85	70.2
TraesCS6B01G245200.1	Wheat	mitochondrion	57.04	67.56
TraesCS4B01G021600.1	Wheat	cytosol	66.33	65.84
TraesCS4A01G292500.1	Wheat	cytosol	65.58	65.58
TraesCS5B01G487700.1	Wheat	cytosol	64.82	65.15
HORVU4Hr1G003250.1	Barley	cytosol	68.34	64.92
EES15556	Sorghum	cytosol, mitochondrion	56.03	58.53
Zm00001d000438_P001	Maize	cytosol, mitochondrion	57.79	57.21
Zm00001d021562_P001	Maize	cytosol, mitochondrion	57.79	57.21
OQU86627	Sorghum	mitochondrion	52.51	56.18
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	51.76	51.89
Zm00001d052676_P001	Maize	plastid	59.3	50.0
Zm00001d052673_P001	Maize	cytosol	50.0	49.75
Zm00001d007403_P001	Maize	cytosol	50.0	49.63
Zm00001d007400_P001	Maize	cytosol	48.99	46.43
Zm00001d032662_P001	Maize	plastid	37.69	38.46
Zm00001d013991_P001	Maize	mitochondrion	38.19	36.1
Zm00001d019478_P001	Maize	cytosol	36.18	34.53
Zm00001d052675_P002	Maize	plastid	55.78	30.12
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	40.7	23.89
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	2.76	0.58

Protein Annotations

EntrezGene:103650032	Gene3D:3.40.47.10	MapMan:50.2.3	UniProt:A0A1D6MR13	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	ProteinID:ONM31439.1	PFAM:PF00195	PFAM:PF02797
PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF29	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI000221E09F	EnsemblPlantsGene:Zm00001d040479	EnsemblPlants:Zm00001d040479_P001	EnsemblPlants:Zm00001d040479_T001	SEG:seg	:

Description

Type III polyketide synthase B

Coordinates

chr3:+:46076165..46080173

Molecular Weight (calculated)

43428.4 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.078

Length

398 amino acids

Sequence
(BLAST)

001: MTSLLLGNQI ARSAVGLCSD RRRELRADGP ATVLAIGTAN PPNCVRQEEY ADYYFRVTKS EHLTSLKDKL KRICHKTAIK KRYFHHTEEL LRGHPALIDR
101: SMPSLHERQD IMASAVPELA AAAAVDAIAE WGRPATEITH LVVTTYSGAH MPGVDWLVAS LLGLRSTVRR TMLYMNGCSS GCVALRLAKD MAENNRGARV
201: LVACAELTLA HFRAPHEAHV DTLILQSLFG DGAGAVIVGA DPVSVEEPDF EMLSASQTMI PESKQVAAGQ LCEDGFHFNP SRDIPSLVRE NIEQCMVDAL
301: SLLGIGGSWN DLFWAVHPGG RAFLDSVEAG LRLEPHKLEA SRRVLSEYGN MSGPSVIFVL DELRRQQERK GMGVILGLGP GVSVETMVLQ ATDSQKKI

Best Arabidopsis Sequence Match ( AT4G00040.1 )
(BLAST)

001: MLVSARVEKQ KRVAYQGKAT VLALGKALPS NVVSQENLVE EYLREIKCDN LSIKDKLQHL CKSTTVKTRY TVMSRETLHK YPELATEGSP TIKQRLEIAN
101: DAVVQMAYEA SLVCIKEWGR AVEDITHLVY VSSSEFRLPG GDLYLSAQLG LSNEVQRVML YFLGCYGGLS GLRVAKDIAE NNPGSRVLLT TSETTVLGFR
201: PPNKARPYNL VGAALFGDGA AALIIGADPT ESESPFMELH CAMQQFLPQT QGVIDGRLSE EGITFKLGRD LPQKIEDNVE EFCKKLVAKA GSGALELNDL
301: FWAVHPGGPA ILSGLETKLK LKPEKLECSR RALMDYGNVS SNTIFYIMDK VRDELEKKGT EGEEWGLGLA FGPGITFEGF LMRNL

Arabidopsis Description

Type III polyketide synthase C [Source:UniProtKB/Swiss-Prot;Acc:O81305]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.