Factsheet for Zm00001d052675_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
peroxisome 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08603	Sorghum	cytosol, mitochondrion	44.64	78.52
EES08602	Sorghum	cytosol, mitochondrion	43.15	78.52
EES08598	Sorghum	cytosol	42.88	78.22
Os11t0529800-00	Rice	cytosol, extracellular	33.38	61.35
Os11t0529500-00	Rice	cytosol	32.7	58.35
Zm00001d040483_P001	Maize	cytosol	23.2	57.58
Zm00001d040497_P001	Maize	mitochondrion	30.39	56.57
Zm00001d040479_P001	Maize	mitochondrion	30.12	55.78
Zm00001d000438_P001	Maize	cytosol, mitochondrion	30.12	55.22
Zm00001d021562_P001	Maize	cytosol, mitochondrion	30.12	55.22
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	26.87	49.87
Zm00001d007400_P001	Maize	cytosol	27.95	49.05
Zm00001d007717_P001	Maize	mitochondrion, plastid	22.66	47.99
Zm00001d052676_P001	Maize	plastid	30.12	47.03
Zm00001d052673_P001	Maize	cytosol	25.24	46.5
Zm00001d007403_P001	Maize	cytosol	25.24	46.38
Zm00001d032662_P001	Maize	plastid	19.27	36.41
Zm00001d019478_P001	Maize	cytosol	19.27	34.05
Zm00001d013991_P001	Maize	mitochondrion	19.4	33.97
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	22.12	24.04
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	1.63	0.64

Protein Annotations

MapMan:16.4.4.1.3	MapMan:19.2.2.1.7	Gene3D:3.40.47.10	UniProt:A0A1D6QIP7	ProteinID:AQK57688.1	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_N	ncoils:Coil	InterPro:DA1-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
PFAM:PF00195	PFAM:PF02797	PFAM:PF12315	PANTHER:PTHR11877	PANTHER:PTHR11877:SF29	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI00084324E7	EnsemblPlantsGene:Zm00001d052675	EnsemblPlants:Zm00001d052675_P002	EnsemblPlants:Zm00001d052675_T002
SEG:seg	:	:	:	:	:

Description

Type III polyketide synthase B

Coordinates

chr4:+:196963480..196969132

Molecular Weight (calculated)

80542.1 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.338

Length

737 amino acids

Sequence
(BLAST)

001: MATTTRSCAN SATVLHGIRH RLRADGPAAI LGIGTANPKN CVPQDQFADW YLDVTKSEHL AELKAKTKKI CDRSGITKRY FYHTEEIIGD HPELIVRDLP
101: SLTTRLSVIA DAAPKLAAEA ASRAIADWGR PAADITHLVV ATNAGANEPG VDQLLAALLG LRPTVRRTLL YLHGCSAGLV ALRVAKDVAE NNRGARVLVA
201: CAQAKILMFG APDDDARLDK VVPMTLFGDG AGAIIVGADP TSRPMAMEIE RPIFHMVSAS QTTLPGTDEA VVLSLRENGL VDGRLSAEVP RLVGGSLEQC
301: LAGSLAPLGL VNESDGGGRW NGFFWAVHPG GRAILDSYEA TLGLQPGKLA ASRHVLSEYG NMMGSTIIFV LDEIRHRRRR EEDTKEKDCQ FGVMSGVGPG
401: LTVETIVLHA ATELEEIAAA GNPGDGATQT RESASSSAEL PSGSGDSSED KCLCFVELAR SMGISQDTHE SMATDAANYL CHQLQHLLGP ISSATSQSGP
501: WEERSVMVRL TQKLQKSKRN KWWRQRRRKH VAELFQKERA DYDRVDQEAD EWRAKQIAKD IAKRRVESMQ QIARKKTNEE RKRLESEVPR NTKYMSLGDD
601: RSLCMECLGS AVMDTGECQP LYHSIRDYYE GMKMKLDQQI PMLLVEQQAL NEAMEGESRG PHHMPETRGL CLSEEQTVSS ILRRPRIGGN RVPVGQGYDL
701: TETCAGAAFT EWDDTTCCYV KVCSTNLMFA GSVNKCS

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.