CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90629
EES00073
EES01135
EES01136
EES04562
EES07584
EES13031
EES19023
KXG27349

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	EES13031	AT3G51240.1	10536025
AT5G13930.1	KXG27349	AT3G51240.1	10536025
AT5G13930.1	EER90629	AT3G55120.1	10536025
AT5G13930.1	EES00073	AT5G08640.1	18467451
AT5G13930.1	EES07584	AT5G08640.1	18467451
AT5G13930.1	EES00073	AT5G08640.1	21669202
AT5G13930.1	EES07584	AT5G08640.1	21669202
AT5G13930.1	EES01135	AT5G42800.1	10536025
AT5G13930.1	EES01136	AT5G42800.1	10536025
AT5G13930.1	EES04562	AT5G42800.1	10536025
AT5G13930.1	EES19023	AT5G42800.1	10536025
AT5G13930.1	EES01135	AT5G42800.1	21669202
AT5G13930.1	EES01136	AT5G42800.1	21669202
AT5G13930.1	EES04562	AT5G42800.1	21669202
AT5G13930.1	EES19023	AT5G42800.1	21669202
AT5G13930.1	EES00073	AT5G63590.1	18467451
AT5G13930.1	EES07584	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29016	Sorghum	cytosol	99.0	99.0
EES09860	Sorghum	cytosol	99.0	99.0
EES09859	Sorghum	cytosol	99.0	99.0
EES08604	Sorghum	cytosol	99.0	99.0
EES09865	Sorghum	cytosol	98.75	98.75
EES09863	Sorghum	cytosol	98.5	98.5
EES09858	Sorghum	cytosol	98.25	98.25
EES09864	Sorghum	cytosol	97.51	97.75
Zm00001d052673_P001	Maize	cytosol	93.52	93.75
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	92.02	92.71
Zm00001d007403_P001	Maize	cytosol	92.27	92.27
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	69.08	88.5
KRH42776	Soybean	cytosol	54.36	85.49
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	69.83	85.37
KRH42759	Soybean	cytosol	82.04	84.79
VIT_14s0068g00930.t01	Wine grape	cytosol	83.04	84.73
Solyc09g091510.2.1	Tomato	cytosol, extracellular	82.04	84.58
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	82.04	84.58
PGSC0003DMT400076178	Potato	cytosol	82.04	84.58
GSMUA_Achr10P...	Banana	cytosol	68.33	84.57
KRH42775	Soybean	cytosol	81.8	84.54
KRH42758	Soybean	cytosol	81.8	84.54
KRH58872	Soybean	cytosol	81.8	84.54
KRH42783	Soybean	cytosol	81.8	84.54
KRH42780	Soybean	cytosol	81.8	84.54
KRH42778	Soybean	cytosol	81.8	84.54
VIT_14s0068g00920.t01	Wine grape	cytosol	82.79	84.48
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	81.8	84.32
KRH42757	Soybean	cytosol	81.55	84.28
KRH42760	Soybean	cytosol	81.3	84.02
VIT_05s0136g00260.t01	Wine grape	cytosol	81.3	83.8
KRH75544	Soybean	cytosol	80.8	83.51
CDX69618	Canola	cytosol	82.04	83.29
CDX78547	Canola	cytosol	81.8	83.25
KRH37579	Soybean	cytosol	80.55	83.25
KRH71115	Soybean	cytosol	80.55	83.25
CDX91090	Canola	cytosol	82.04	83.08
Bra008792.1-P	Field mustard	cytosol	81.8	83.04
CDX70528	Canola	cytosol	81.8	82.83
CDY09836	Canola	cytosol	81.55	82.78
KRG94730	Soybean	cytosol	80.3	82.35
AT5G13930.1	Thale cress	cytosol	81.05	82.28
EES14634	Sorghum	cytosol	81.55	82.16
Bra006224.1-P	Field mustard	cytosol	81.05	82.07
Bra023441.1-P	Field mustard	cytosol	80.55	81.98
KRH27737	Soybean	cytosol	79.05	81.49
KRH77699	Soybean	endoplasmic reticulum	78.8	81.23
Bra020688.1-P	Field mustard	cytosol	77.56	78.93
CDY51056	Canola	cytosol	77.31	78.68
Bra036307.1-P	Field mustard	cytosol	76.56	78.12
CDY05664	Canola	cytosol	76.56	77.92
PGSC0003DMT400076179	Potato	cytosol	73.57	77.84
GSMUA_Achr10P...	Banana	mitochondrion	63.84	74.64
CDY07114	Canola	cytosol	75.06	73.41
CDY05666	Canola	mitochondrion	67.83	65.07
EER99419	Sorghum	cytosol	53.62	53.22
OQU85107	Sorghum	cytosol	51.87	52.13
OQU85124	Sorghum	cytosol	51.62	51.88
EES15677	Sorghum	cytosol	51.12	50.62
KXG28549	Sorghum	cytosol	32.42	50.58
KXG36274	Sorghum	cytosol	49.88	50.38
EER99418	Sorghum	cytosol	50.12	50.25
EES09995	Sorghum	cytosol	50.37	50.0
EES08732	Sorghum	cytosol	50.37	50.0
EES09649	Sorghum	cytosol	49.63	49.5
EES08596	Sorghum	cytosol	49.38	48.41
EES15184	Sorghum	cytosol	47.88	46.83
OQU83574	Sorghum	cytosol	47.13	46.67
EES08602	Sorghum	cytosol, mitochondrion	45.89	45.43
EES08598	Sorghum	cytosol	45.64	45.3
EES15556	Sorghum	cytosol, mitochondrion	42.89	45.14
EES08603	Sorghum	cytosol, mitochondrion	46.13	44.15
OQU83321	Sorghum	cytosol	44.64	43.77
OQU83561	Sorghum	cytosol	34.91	43.61
OQU86627	Sorghum	mitochondrion	40.15	43.28
EER95816	Sorghum	cytosol	45.64	42.56
KXG28978	Sorghum	cytosol	32.67	41.72
OQU83573	Sorghum	cytosol	35.91	40.68
KXG28544	Sorghum	cytosol	36.41	39.04
EER98407	Sorghum	cytosol	38.9	37.32
EER91459	Sorghum	cytosol	34.91	28.87

Protein Annotations

KEGG:00941+2.3.1.74	Gene3D:3.40.47.10	EntrezGene:8064817	MapMan:9.2.2.1.1.1	ProteinID:AAD41873.1	UniProt:C5Y3Q0
InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N	EnsemblPlants:EES09862	ProteinID:EES09862	ProteinID:EES09862.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009813
GO:GO:0016210	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	MetaCyc:PWY-5135
MetaCyc:PWY-6316	MetaCyc:PWY-6787	MetaCyc:PWY-7397	InterPro:Polyketide_synthase_type-III	EnsemblPlantsGene:SORBI_3005G137000	SUPFAM:SSF53901
unigene:Sbi.20314	InterPro:Thiolase-like	UniParc:UPI00001278E4	RefSeq:XP_002450874.1	SEG:seg	:

Description

CHS1hypothetical protein

Coordinates

chr5:-:58925899..58927778

Molecular Weight (calculated)

43747.8 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.115

Length

401 amino acids

Sequence
(BLAST)

001: MAGATVTVEE VRKAQRATGP ATVLAIGTAT PANCVHQADY PDYYFRITKS EHMTELKEKF KRMCDKSQIR KRYMHLTEEY LAENPNMCAY MAPSLDARQD
101: IVVVEVPKLG KAAAQKAIKE WGQPKSKITH LVFCTTSGVD MPGADYQLTK MLGLRPSVNR LMMYQQGCFA GGTVLRVAKD LAENNRGARV LVVCSEITAV
201: TFRGPSESHL DSMVGQALFG DGAAAVIVGA DPDERVERPL FQLVSASQRI LPDSEGAIDG HLREVGLTFH LLKDVPGLIS KNIERALEEA FKPLGITDYN
301: SIFWVAHPGG PAILDQVEAK VGLEKERMRA TRHVLSEYGN MSSACVLFIL DEMRKRSAED GQTTTGEGFD WGVLFGFGPG LTVETVVLHS VPITTGAAIT
401: A

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.