CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90629
EES00073
EES01135
EES01136
EES04562
EES07584
EES13031
EES19023
KXG27349

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	EES13031	AT3G51240.1	10536025
AT5G13930.1	KXG27349	AT3G51240.1	10536025
AT5G13930.1	EER90629	AT3G55120.1	10536025
AT5G13930.1	EES00073	AT5G08640.1	18467451
AT5G13930.1	EES07584	AT5G08640.1	18467451
AT5G13930.1	EES00073	AT5G08640.1	21669202
AT5G13930.1	EES07584	AT5G08640.1	21669202
AT5G13930.1	EES01135	AT5G42800.1	10536025
AT5G13930.1	EES01136	AT5G42800.1	10536025
AT5G13930.1	EES04562	AT5G42800.1	10536025
AT5G13930.1	EES19023	AT5G42800.1	10536025
AT5G13930.1	EES01135	AT5G42800.1	21669202
AT5G13930.1	EES01136	AT5G42800.1	21669202
AT5G13930.1	EES04562	AT5G42800.1	21669202
AT5G13930.1	EES19023	AT5G42800.1	21669202
AT5G13930.1	EES00073	AT5G63590.1	18467451
AT5G13930.1	EES07584	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09863	Sorghum	cytosol	82.16	81.55
EES09862	Sorghum	cytosol	82.16	81.55
EES09860	Sorghum	cytosol	82.16	81.55
EES09859	Sorghum	cytosol	82.16	81.55
EES08604	Sorghum	cytosol	82.16	81.55
KXG29016	Sorghum	cytosol	82.16	81.55
EES09865	Sorghum	cytosol	81.91	81.3
EES09858	Sorghum	cytosol	81.91	81.3
EES09864	Sorghum	cytosol	81.41	81.0
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	63.32	80.51
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	64.82	78.66
GSMUA_Achr10P...	Banana	cytosol	63.57	78.09
TraesCS5D01G488700.1	Wheat	cytosol	76.88	77.47
TraesCS5D01G488600.1	Wheat	cytosol	76.88	77.47
VIT_14s0068g00930.t01	Wine grape	cytosol	76.13	77.1
PGSC0003DMT400076178	Potato	cytosol	75.13	76.86
Solyc09g091510.2.1	Tomato	cytosol, extracellular	75.13	76.86
KRH42776	Soybean	cytosol	49.25	76.86
VIT_14s0068g00920.t01	Wine grape	cytosol	75.38	76.34
VIT_05s0136g00260.t01	Wine grape	cytosol	74.37	76.09
CDX78547	Canola	cytosol	75.13	75.89
TraesCS1A01G032100.1	Wheat	cytosol	75.13	75.7
CDY51056	Canola	cytosol	74.87	75.63
CDY05664	Canola	cytosol	74.87	75.63
CDX70528	Canola	cytosol	75.13	75.51
CDX69618	Canola	cytosol	74.87	75.44
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	73.62	75.32
KRH42759	Soybean	cytosol	73.37	75.26
KRH42778	Soybean	cytosol	73.37	75.26
KRH42780	Soybean	cytosol	73.37	75.26
TraesCS1B01G041000.1	Wheat	cytosol	74.62	75.19
CDY09836	Canola	cytosol	74.62	75.19
Bra008792.1-P	Field mustard	cytosol	74.62	75.19
Bra020688.1-P	Field mustard	cytosol	74.37	75.13
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	73.37	75.06
KRH42758	Soybean	cytosol	73.12	75.0
KRH42757	Soybean	cytosol	73.12	75.0
KRH42760	Soybean	cytosol	73.12	75.0
KRH42775	Soybean	cytosol	73.12	75.0
KRH42783	Soybean	cytosol	73.12	75.0
KRH58872	Soybean	cytosol	73.12	75.0
KRH75544	Soybean	cytosol	73.12	75.0
Bra006224.1-P	Field mustard	cytosol	74.37	74.75
CDX91090	Canola	cytosol	74.37	74.75
KRH37579	Soybean	cytosol	72.86	74.74
KRH71115	Soybean	cytosol	72.86	74.74
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	74.12	74.68
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	74.12	74.68
TraesCS1D01G033600.1	Wheat	cytosol	74.62	74.44
AT5G13930.1	Thale cress	cytosol	73.87	74.43
KRG94730	Soybean	cytosol	73.12	74.42
TraesCS1A01G032300.1	Wheat	cytosol	74.37	74.37
TraesCS1B01G040100.1	Wheat	cytosol	73.62	74.18
Bra023441.1-P	Field mustard	cytosol	73.37	74.11
HORVU1Hr1G004830.1	Barley	cytosol	73.87	74.06
Os07t0214900-00	Rice	cytosol	74.87	73.95
TraesCS1B01G040500.1	Wheat	cytosol	74.12	73.93
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	74.37	73.63
TraesCS1D01G033800.1	Wheat	cytosol	73.62	73.62
HORVU1Hr1G089540.1	Barley	mitochondrion	73.62	73.43
KRH27737	Soybean	cytosol	71.11	72.75
KRH77699	Soybean	endoplasmic reticulum	71.11	72.75
PGSC0003DMT400076179	Potato	cytosol	69.1	72.56
Bra036307.1-P	Field mustard	cytosol	71.11	72.01
GSMUA_Achr10P...	Banana	mitochondrion	60.55	70.26
CDY07114	Canola	cytosol	70.1	68.05
CDY05666	Canola	mitochondrion	65.83	62.68
EER99419	Sorghum	cytosol	54.02	53.22
OQU85107	Sorghum	cytosol	52.76	52.63
OQU85124	Sorghum	cytosol	52.51	52.38
KXG36274	Sorghum	cytosol	51.26	51.39
KXG28549	Sorghum	cytosol	33.17	51.36
EER99418	Sorghum	cytosol	51.51	51.25
EES15677	Sorghum	cytosol	51.51	50.62
EES08732	Sorghum	cytosol	51.26	50.49
EES09995	Sorghum	cytosol	51.26	50.49
EES09649	Sorghum	cytosol	49.25	48.76
EES08596	Sorghum	cytosol	49.75	48.41
EES15184	Sorghum	cytosol	47.99	46.59
EES08602	Sorghum	cytosol, mitochondrion	47.24	46.42
OQU83574	Sorghum	cytosol	47.24	46.42
EES15556	Sorghum	cytosol, mitochondrion	43.97	45.93
EES08598	Sorghum	cytosol	46.48	45.79
EES08603	Sorghum	cytosol, mitochondrion	46.48	44.15
OQU83561	Sorghum	cytosol	35.43	43.93
OQU86627	Sorghum	mitochondrion	40.2	43.01
EER95816	Sorghum	cytosol	45.98	42.56
OQU83321	Sorghum	cytosol	43.47	42.3
KXG28978	Sorghum	cytosol	32.91	41.72
OQU83573	Sorghum	cytosol	35.43	39.83
KXG28544	Sorghum	cytosol	36.43	38.77
EER98407	Sorghum	cytosol	38.94	37.08
EER91459	Sorghum	cytosol	35.43	29.07

Protein Annotations

Gene3D:3.40.47.10	EntrezGene:8069670	MapMan:9.2.2.1.1.1	EMBL:AY069951	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N
EnsemblPlants:EES14634	ProteinID:EES14634	ProteinID:EES14634.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III
UniProt:Q8VWQ7	EnsemblPlantsGene:SORBI_3007G058900	SUPFAM:SSF53901	unigene:Sbi.13268	InterPro:Thiolase-like	UniParc:UPI00000A8471
RefSeq:XP_002445139.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:6107597..6114305

Molecular Weight (calculated)

43575.7 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.017

Length

398 amino acids

Sequence
(BLAST)

001: MTTGKVTLEA VRKAQRAEGP ATVLAIGTAT PANCVYQADY PDYYFRVTKS EHLTDLKEKF KRICHKSMIR KRYMHLTEDI LEENPNMSSY WAPSLDARQD
101: ILIQEIPKLG AEAAEKALKE WGQPRSRITH LVFCTTSGVD MPGADYQLIK LLGLCPSVNR AMMYHQGCFA GGMVLRLAKD LAENNRGARV LIVCSEITVV
201: TFRGPSESHL DSLVGQALFG DGAAAVIVGA DPSEPAERPL FHLVSASQTI LPDSEGAIEG HLREVGLTFH LQDRVPQLIS MNIERLLEDA FAPLGISDWN
301: SIFWVAHPGG PAILNMVEAK VGLDKARMCA TRHILAEYGN MSSVCVLFIL DEMRNRSAKD GHTTTGEGME WGVLFGFGPG LTVETIVLHS VPITTVAA

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.