Factsheet for GSMUA_Achr3P01140_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	33.68	59.57
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	33.86	59.15
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	31.59	57.83
GSMUA_Achr2P22970_001	Banana	mitochondrion	35.6	56.67
GSMUA_Achr6P08990_001	Banana	mitochondrion	33.68	56.6
GSMUA_Achr10P...	Banana	mitochondrion	32.29	53.94
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	33.86	53.01
GSMUA_Achr10P...	Banana	mitochondrion	33.86	53.01
GSMUA_Achr10P...	Banana	mitochondrion	33.51	52.89
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	30.19	52.74
GSMUA_Achr6P08170_001	Banana	cytosol	33.86	52.72
GSMUA_Achr11P...	Banana	mitochondrion	31.76	50.56
VIT_16s0022g01020.t01	Wine grape	cytosol	26.53	49.35
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	31.24	48.77
GSMUA_Achr6P08180_001	Banana	cytosol	34.03	48.75
GSMUA_Achr3P22530_001	Banana	cytosol	25.83	47.59
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	26.0	19.81

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr3G01140_001	EnsemblPlants:GSMUA_Achr3P01140_001	EnsemblPlants:GSMUA_Achr3T01140_001	InterPro:IPR016039	UniProt:M0SAT2	PFAM:PF00195
PFAM:PF02797	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI000295A173	SEG:seg	:	:	:	:

Description

Chalcone synthase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01140_001]

Coordinates

chr3:-:852383..855220

Molecular Weight (calculated)

61877.4 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.029

Length

573 amino acids

Sequence
(BLAST)

001: MAHINAFPRA QGADGPATVL AIGTANPAHF VDQMEYPDFF FRITNAEDKT ELKEKFKRIC ENSAIRKRHM SLTEEILKGN PNLCGYMEQP SFDARQKVVL
101: EAVPKMAAES AEKAIKEWGR PTSDITHLVF CSAAGLDLPG VDYRLDLVEN NKGARALVVS SEVNVMFFRG PDDDHFENLI GQALFGDGSA ALIVGADPVE
201: GVEKPIYEIS SASQVMVPES EEMVAGHLRE IGLTFHLAKK VPFIVGSNIV RCLQAAFAPM GITDWNELFW IVHTGGRAII DQVEANAGLA AGKLAPTRHV
301: LSEHGNMQSA SVLFIMDEMR KRSAVEGHAT TGQGCQWGVL FGFGPGISVE TVVLRSFPIY PGHVTAIHLA ASTLHSFLSL LLPSVLFVNA FPLSTLNPLI
401: SSFVSPIHSS PLFVLHPAEV ACNLCWYALY WGTPWPPGAS PARWSWRRGS TAPLHCGLRD VPVDMPPPDP AASGVRGGVP EGVGGDGGAQ GAPPPEEAVQ
501: SPSATSAGCS LMVMVTASQF AAVLVTTRHR SYDSLFNAGE LAKVHLKHER PKKEKTTGTT LNRLRKIKDK KPI

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.