CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46656	Canola	cytosol	74.76	66.76
CDX92822	Canola	cytosol	74.45	66.48
AT4G27250.1	Thale cress	cytosol	70.66	63.28
PGSC0003DMT400056128	Potato	cytosol	40.06	44.1
KRH27122	Soybean	cytosol	47.95	42.34
KRH22215	Soybean	cytosol	23.34	42.05
Solyc12g005350.1.1	Tomato	cytosol	43.53	40.47
KRH25898	Soybean	cytosol, extracellular	37.54	39.93
KRH55603	Soybean	mitochondrion	47.0	39.31
VIT_19s0014g04980.t01	Wine grape	golgi, plasma membrane, plastid	49.21	38.81
GSMUA_Achr5P00800_001	Banana	mitochondrion	43.22	36.63
HORVU7Hr1G101860.2	Barley	cytosol	36.28	34.53
TraesCS7D01G440000.1	Wheat	cytosol	37.85	33.9
TraesCS7A01G450700.1	Wheat	cytosol, plastid	37.85	33.8
TraesCS7B01G350500.1	Wheat	cytosol	37.22	33.43
Os06t0683100-01	Rice	cytosol	35.33	30.52
OQU76902	Sorghum	cytosol	37.22	30.33
Zm00001d014481_P001	Maize	cytosol	35.96	30.0
CDY21246	Canola	cytosol	22.08	28.69
CDY52321	Canola	cytosol	29.02	27.22
CDY25313	Canola	cytosol	28.71	26.92
CDY08270	Canola	cytosol	18.61	26.46
CDY32381	Canola	cytosol	28.71	26.38
CDY07276	Canola	cytosol	28.39	26.32
CDY52372	Canola	cytosol	30.6	25.19
CDX95155	Canola	cytosol	30.6	25.19
CDY37037	Canola	mitochondrion	22.4	22.76
CDY72000	Canola	cytosol	25.24	22.73
CDX74737	Canola	cytosol	24.61	22.16
CDY57107	Canola	cytosol, peroxisome, plastid	24.92	22.07

Protein Annotations

EnsemblPlants:CDX89264	EnsemblPlantsGene:GSBRNA2T00149472001	Gene3D:3.40.50.720	GO:A0A078DKW0	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF350
PFAM:PF01370	ProteinID:CDX89264	ProteinID:CDX89264.1	SUPFAM:SSF51735	UniParc:UPI0004EEE7DC	MapMan:35.1

Description

BnaA01g16290D

Coordinates

chrLK031858:+:593192..597962

Molecular Weight (calculated)

35794.5 Da

IEP (calculated)

9.663

GRAVY (calculated)

-0.206

Length

317 amino acids

Sequence
(BLAST)

001: MRYRPKSIIY TKMMTYCATG ANGYVGSWLV KSKSISKLSF GLPPLTAKSQ YFQTKWRGNE RLRLFRVDLQ DDGSFDDAIK GCDGVFHIAA SMEFDISPNH
101: VNLGTTYVQG KVIDPAIKGV RNVLGSCLKS KSVKRVVFTS SISTLTSKDE NERWRSIVGE TCKIPIDRVL KTKASGWINT LIYVLSKLIS EEESFRYEKE
201: RGLDLPSSSL SPITGARLFA ILSAVNKRMG SIGLVHVQDI CIAHLFLMEE PKAEGQYICC VDNIDMHDLL LNHTFTKNFT RLFSVYRVDD DLEERPGLMK
301: PMISSKKFPS LNHKLKQ

Best Arabidopsis Sequence Match ( AT4G27250.1 )
(BLAST)

001: MELQGEESKT ATYCVTGASG YIGSWLVKSL LQRGYTVHAT LRDLAKSEYF QSKWKENERL RLFRADLRDD GSFDDAVKGC DGVFHVAASM EFDISSDHVN
101: LESYVQSKVI EPALKGVRNV LSSCLKSKSV KRVVFTSSIS TLTAKDENER MRSFVDETCK AHVDHVLKTQ ASGWIYVLSK LVSEEEAFRY AKERGMDLVS
201: VITTTVSGPF LTPFVPSSVQ VLLSPITGDS KLFAILSAVN KRMGSIALVH IEDICRAHLF LMEQPKAKGQ YICCVDNIDM HELMLHHFSK DYLCKVQKVN
301: EDEEERECMK PIISSKKLRE LGFEYKYGIE EIVDQTIDAS IKIKFPTLNH KLRQ

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8H1R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.