Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92822 | Canola | cytosol | 83.9 | 83.66 |
| Bra019062.1-P | Field mustard | cytosol | 83.62 | 83.62 |
| CDY46656 | Canola | cytosol | 83.62 | 83.38 |
| CDX89264 | Canola | mitochondrion | 63.28 | 70.66 |
| PGSC0003DMT400056128 | Potato | cytosol | 45.76 | 56.25 |
| KRH27122 | Soybean | cytosol | 56.78 | 55.99 |
| KRH22215 | Soybean | cytosol | 27.68 | 55.68 |
| Solyc12g005350.1.1 | Tomato | cytosol | 52.54 | 54.55 |
| KRH25898 | Soybean | cytosol, extracellular | 44.07 | 52.35 |
| VIT_19s0014g04980.t01 | Wine grape | golgi, plasma membrane, plastid | 58.76 | 51.74 |
| KRH55603 | Soybean | mitochondrion | 55.37 | 51.72 |
| GSMUA_Achr5P00800_001 | Banana | mitochondrion | 49.72 | 47.06 |
| HORVU7Hr1G101860.2 | Barley | cytosol | 41.81 | 44.44 |
| TraesCS7A01G450700.1 | Wheat | cytosol, plastid | 44.07 | 43.94 |
| TraesCS7D01G440000.1 | Wheat | cytosol | 43.22 | 43.22 |
| TraesCS7B01G350500.1 | Wheat | cytosol | 42.66 | 42.78 |
| Os06t0683100-01 | Rice | cytosol | 42.66 | 41.14 |
| OQU76902 | Sorghum | cytosol | 44.63 | 40.62 |
| Zm00001d014481_P001 | Maize | cytosol | 42.37 | 39.47 |
| AT1G61720.1 | Thale cress | cytosol | 33.9 | 35.29 |
| AT5G42800.1 | Thale cress | cytosol | 35.59 | 32.98 |
| AT2G45400.1 | Thale cress | cytosol | 32.2 | 31.32 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:828833 | ProteinID:AEE85316.1 | ArrayExpress:AT4G27250 | EnsemblPlantsGene:AT4G27250 |
| RefSeq:AT4G27250 | TAIR:AT4G27250 | RefSeq:AT4G27250-TAIR-G | EnsemblPlants:AT4G27250.1 | TAIR:AT4G27250.1 | EMBL:AY142521 |
| Unigene:At.32112 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0050662 |
| InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_194455.2 | PFAM:PF01370 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF350 |
| UniProt:Q8H1R1 | SUPFAM:SSF51735 | UniParc:UPI00000ADA40 | SEG:seg | : | : |
Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8H1R1]
Coordinates
chr4:-:13642515..13644507
Molecular Weight (calculated)
40059.2 Da
IEP (calculated)
7.072
GRAVY (calculated)
-0.226
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MELQGEESKT ATYCVTGASG YIGSWLVKSL LQRGYTVHAT LRDLAKSEYF QSKWKENERL RLFRADLRDD GSFDDAVKGC DGVFHVAASM EFDISSDHVN
101: LESYVQSKVI EPALKGVRNV LSSCLKSKSV KRVVFTSSIS TLTAKDENER MRSFVDETCK AHVDHVLKTQ ASGWIYVLSK LVSEEEAFRY AKERGMDLVS
201: VITTTVSGPF LTPFVPSSVQ VLLSPITGDS KLFAILSAVN KRMGSIALVH IEDICRAHLF LMEQPKAKGQ YICCVDNIDM HELMLHHFSK DYLCKVQKVN
301: EDEEERECMK PIISSKKLRE LGFEYKYGIE EIVDQTIDAS IKIKFPTLNH KLRQ
101: LESYVQSKVI EPALKGVRNV LSSCLKSKSV KRVVFTSSIS TLTAKDENER MRSFVDETCK AHVDHVLKTQ ASGWIYVLSK LVSEEEAFRY AKERGMDLVS
201: VITTTVSGPF LTPFVPSSVQ VLLSPITGDS KLFAILSAVN KRMGSIALVH IEDICRAHLF LMEQPKAKGQ YICCVDNIDM HELMLHHFSK DYLCKVQKVN
301: EDEEERECMK PIISSKKLRE LGFEYKYGIE EIVDQTIDAS IKIKFPTLNH KLRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.