Factsheet for Solyc12g005350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056128	Potato	cytosol	75.66	89.58
KRH27122	Soybean	cytosol	60.12	57.1
KRH22215	Soybean	cytosol	28.74	55.68
VIT_19s0014g04980.t01	Wine grape	golgi, plasma membrane, plastid	62.46	52.99
CDX92822	Canola	cytosol	54.84	52.68
AT4G27250.1	Thale cress	cytosol	54.55	52.54
Bra019062.1-P	Field mustard	cytosol	54.25	52.26
CDY46656	Canola	cytosol	54.25	52.11
KRH25898	Soybean	cytosol, extracellular	45.45	52.01
KRH55603	Soybean	mitochondrion	57.77	51.98
GSMUA_Achr5P00800_001	Banana	mitochondrion	54.55	49.73
TraesCS7B01G350500.1	Wheat	cytosol	46.63	45.04
Os06t0683100-01	Rice	cytosol	48.39	44.96
TraesCS7D01G440000.1	Wheat	cytosol	46.63	44.92
TraesCS7A01G450700.1	Wheat	cytosol, plastid	46.33	44.51
Solyc04g071740.1.1	Tomato	extracellular	16.42	44.44
HORVU7Hr1G101860.2	Barley	cytosol	42.82	43.84
CDX89264	Canola	mitochondrion	40.47	43.53
Zm00001d014481_P001	Maize	cytosol	47.8	42.89
OQU76902	Sorghum	cytosol	48.39	42.42
Solyc03g031470.2.1	Tomato	golgi	41.35	42.22
Solyc05g051010.2.1	Tomato	cytosol, endoplasmic reticulum	19.94	41.46
Solyc01g094070.2.1	Tomato	cytosol	34.02	35.8
Solyc02g085020.2.1	Tomato	cytosol	37.24	33.51
Solyc04g015590.2.1	Tomato	cytosol	17.3	33.33
Solyc10g009500.2.1	Tomato	cytosol	17.89	32.8
Solyc05g051020.2.1	Tomato	cytosol, plastid	10.26	29.66
Solyc10g009510.1.1	Tomato	cytosol	8.21	29.17
Solyc10g009540.1.1	Tomato	cytosol	21.99	28.3
Solyc10g018140.1.1	Tomato	cytosol	20.23	27.49
Solyc10g009520.2.1	Tomato	mitochondrion	17.01	25.89

Protein Annotations

EnsemblPlants:Solyc12g005350.1.1	EnsemblPlantsGene:Solyc12g005350.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF350	PFAM:PF01370
SUPFAM:SSF51735	UniParc:UPI000276A2F3	UniProt:K4DB73	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr12:+:216225..218423

Molecular Weight (calculated)

37947.9 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.040

Length

341 amino acids

Sequence
(BLAST)

001: MEENKSYCVT GGTGFIGSWL IKSLLQMGYK VHAAVRHPEK SSHLLKLAEG SEMLRLFKAD LREEGSFDEA MRGCIGLFHV AAPMEFCPPA TENVERYVEE
101: NMIEPAIEGT LNVLKSCLKS NSVKKVVFTS SISTITARDN FGRWRPFVDE SCKVPIQHVK HTKPTGWVYV LLKVLTEDAA FQFAKENGIN LVSTITPTIA
201: GPFLTPTVPS SIQVLLSPIT DDPDMLAILT AVNTRMGSIA LAHIEDICRA HIFLMENIKA QGRYICCAQS WALSEVIDHL KNEYPYLDAE RRGGHDSVIP
301: SEISSKKLRG LGFSFKYEIN DIIRDTITSC IHHGFLASIQ K

Best Arabidopsis Sequence Match ( AT4G27250.1 )
(BLAST)

001: MELQGEESKT ATYCVTGASG YIGSWLVKSL LQRGYTVHAT LRDLAKSEYF QSKWKENERL RLFRADLRDD GSFDDAVKGC DGVFHVAASM EFDISSDHVN
101: LESYVQSKVI EPALKGVRNV LSSCLKSKSV KRVVFTSSIS TLTAKDENER MRSFVDETCK AHVDHVLKTQ ASGWIYVLSK LVSEEEAFRY AKERGMDLVS
201: VITTTVSGPF LTPFVPSSVQ VLLSPITGDS KLFAILSAVN KRMGSIALVH IEDICRAHLF LMEQPKAKGQ YICCVDNIDM HELMLHHFSK DYLCKVQKVN
301: EDEEERECMK PIISSKKLRE LGFEYKYGIE EIVDQTIDAS IKIKFPTLNH KLRQ

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8H1R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.