CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76068	Canola	cytosol	63.69	87.7
CDY02966	Canola	cytosol	62.5	86.54
AT3G55970.1	Thale cress	cytosol	61.9	85.95
Bra007204.1-P	Field mustard	cytosol	97.82	79.39
CDY27251	Canola	nucleus	97.22	78.91
KRH14938	Soybean	cytosol	46.23	64.54
VIT_13s0067g01020.t01	Wine grape	cytosol	45.63	64.07
KRG97722	Soybean	cytosol	45.44	63.43
KRH31155	Soybean	cytosol	45.24	63.16
Solyc03g096050.2.1	Tomato	cytosol	43.25	61.06
CDY04960	Canola	cytosol	45.04	61.02
CDY11329	Canola	cytosol	44.84	60.75
PGSC0003DMT400031149	Potato	cytosol	42.86	60.67
KRH73197	Soybean	cytosol	45.44	60.58
CDX80966	Canola	cytosol	44.64	60.48
CDY14105	Canola	cytosol, nucleus, peroxisome	45.04	59.11
GSMUA_Achr6P15610_001	Banana	cytosol	39.09	55.97
CDY07746	Canola	plastid	37.7	53.82
GSMUA_Achr7P15540_001	Banana	cytosol	37.7	53.67
TraesCS1B01G088600.1	Wheat	cytoskeleton, cytosol, peroxisome	37.9	53.35
CDY14476	Canola	plastid	37.1	52.97
CDY18399	Canola	plastid	37.1	52.82
TraesCS1D01G072700.1	Wheat	cytoskeleton, cytosol, peroxisome	37.5	52.79
CDY68873	Canola	plastid	36.9	52.69
CDX93319	Canola	plastid	36.9	52.69
TraesCS1A01G070200.1	Wheat	cytoskeleton, cytosol, peroxisome	37.1	52.23
EES18946	Sorghum	cytosol	37.5	51.64
Os01t0832600-01	Rice	cytosol	37.3	51.37
CDY08545	Canola	cytosol	41.07	51.11
HORVU1Hr1G015050.7	Barley	cytosol, peroxisome	36.71	50.96
CDY01001	Canola	cytosol	40.87	50.86
Zm00001d028744_P001	Maize	cytosol	37.9	50.8
TraesCS4A01G109200.1	Wheat	cytosol	36.9	50.54
TraesCS3B01G383900.1	Wheat	cytosol	37.3	50.4
TraesCS4B01G195000.1	Wheat	cytosol	36.71	50.27
TraesCS3D01G345600.1	Wheat	cytosol	37.7	50.26
TraesCS3A01G351400.2	Wheat	cytosol	37.7	50.13
HORVU4Hr1G056500.2	Barley	cytosol, peroxisome, plastid	36.51	49.6
TraesCS4B01G328300.1	Wheat	cytosol	26.19	49.25
Zm00001d042980_P002	Maize	cytosol	36.51	49.2
TraesCS4D01G195700.1	Wheat	cytosol	35.91	49.18
Os05t0127500-01	Rice	cytosol	35.91	49.18
EES01705	Sorghum	cytosol	37.5	48.71
Zm00001d035462_P001	Maize	cytosol	36.9	48.69
EER92419	Sorghum	cytosol	36.9	48.56
Os03t0289800-01	Rice	cytosol	37.1	48.32
Zm00001d047744_P001	Maize	mitochondrion	37.9	46.93
HORVU3Hr1G087570.4	Barley	cytosol, peroxisome, plastid	37.3	45.97
Zm00001d012456_P004	Maize	plastid	37.7	40.25
CDY34450	Canola	cytosol	26.19	38.6
CDY32234	Canola	cytosol, nucleus, peroxisome	26.19	38.6
CDX69931	Canola	cytoskeleton, cytosol, peroxisome	24.6	36.9
CDY21556	Canola	cytoskeleton, cytosol, peroxisome	24.6	36.9
CDY41520	Canola	cytosol	18.06	36.84
CDY48154	Canola	cytosol	22.22	36.72
CDX99549	Canola	vacuole	15.48	36.62
CDY69013	Canola	cytosol	22.22	36.48
CDY39565	Canola	cytosol	21.63	35.74
CDX90761	Canola	plastid	24.8	35.71
CDX88109	Canola	mitochondrion	23.61	34.9
CDX80450	Canola	mitochondrion	23.41	34.6
CDY05412	Canola	mitochondrion	23.21	34.31
CDY05445	Canola	plastid	23.21	34.31
CDY39860	Canola	cytosol	21.03	34.3
CDX86858	Canola	cytosol	23.02	34.22
CDY05103	Canola	cytosol, nucleus, peroxisome	23.81	34.19
CDY41522	Canola	cytosol	20.04	34.01
CDX99548	Canola	cytosol	22.82	33.92
CDY31361	Canola	cytosol	20.83	33.87
CDX81188	Canola	cytosol	21.03	33.12
CDY30486	Canola	cytosol, nucleus, peroxisome	23.21	32.87
CDX99550	Canola	cytosol	22.02	32.55
CDY41286	Canola	cytosol	22.82	32.12
CDY23457	Canola	cytosol, nucleus, peroxisome	22.62	32.02
CDY56988	Canola	peroxisome	22.62	31.93
CDY10816	Canola	cytosol	22.62	31.84
CDY42687	Canola	peroxisome	22.62	31.84
CDX97750	Canola	cytosol	13.89	31.67
CDX77983	Canola	cytosol	22.42	31.56
CDX90759	Canola	cytosol	18.85	31.46
CDX90656	Canola	cytosol	21.83	31.43
CDX73739	Canola	cytosol	22.22	31.28
CDX94133	Canola	cytosol	22.02	31.01
CDX74687	Canola	cytosol	22.02	30.92
CDY29008	Canola	cytosol	21.43	30.86
CDX75020	Canola	cytosol	22.42	30.71
CDX98776	Canola	cytosol	22.22	28.5
CDX70044	Canola	cytosol, nucleus, peroxisome	19.84	27.7
CDY65238	Canola	cytosol, nucleus, peroxisome	19.64	27.42
CDX76765	Canola	cytosol	12.7	26.89
CDX76159	Canola	cytoskeleton, cytosol, peroxisome	15.48	26.62
CDY31363	Canola	cytosol	21.63	25.83
CDY41521	Canola	cytosol, mitochondrion	0.2	4.76

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.120.330	Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-dom	GO:A0A078C5T1	EnsemblPlants:CDX72185	ProteinID:CDX72185	ProteinID:CDX72185.1	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0019538	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00156015001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03145	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682
PFscan:PS51081	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF134	SUPFAM:SSF49599	SUPFAM:SSF51197
SUPFAM:SSF57850	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EEA0E0	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

BnaC08g26890D

Coordinates

chrLK031795:+:2901210..2906122

Molecular Weight (calculated)

57378.8 Da

IEP (calculated)

7.195

GRAVY (calculated)

-0.397

Length

504 amino acids

Sequence
(BLAST)

001: MNMFQDWPEP IVRVQSLSQS NLKAIPNRYV KPLSQRPNLP SQNHHNKHNP VTAAIPIIDL GGLYTNDITL HAKTLDEISK ACKEWGFFQV VNHGMSPQLM
101: DRAKETWRDF FHLPMELKNM HANSPKTYEG YGSRLGVEKG AILDWSDYYY LHYCPLSLKD YTKWPSLSLH RREILEDYCK EMVKLCENLM SILSRNLGLQ
201: EDILQNAFGG KEESGGCLRV NYYPKCPQPE LTLGLSPHSD PGGLTILLPD EQVAGLQVRG CDDAWITVEP APHALIVNIG DQIQMLTNSI YKSIEHRVIV
301: SPAKERLSLA FFYNPKGNIP IEPLKELVTE DSPALYSSTT YDQYRQFMRF SEDGNNSTSQ KRQRTSRDTK GKKKRTATLH DLDAIECPLC FDPLTIPIFQ
401: CDNGHIACFT CLHKLKQKCA TCSLKTRSRN RAMERVLELL RVPCPNVELG CSEIISFSET STHLEICAFT QRACPFSSCD FVCFNKDLYE HSIAKHCESS
501: IVYV

Best Arabidopsis Sequence Match ( AT3G55970.1 )
(BLAST)

001: MNIFQDWPEP IVRVQSLSES NLGAIPNRYV KPLSQRPNIT PHNKHNPQTT TIPIIDLGRL YTDDLTLQAK TLDEISKACR ELGFFQVVNH GMSPQLMDQA
101: KATWREFFNL PMELKNMHAN SPKTYEGYGS RLGVEKGAIL DWSDYYYLHY QPSSLKDYTK WPSLPLHCRE ILEDYCKEMV KLCENLMKIL SKNLGLQEDR
201: LQNAFGGKEE SGGCLRVNYY PKCPQPELTL GISPHSDPGG LTILLPDEQV ASLQVRGSDD AWITVEPAPH AFIVNMGDQI QMLSNSIYKS VEHRVIVNPE
301: NERLSLAFFY NPKGNVPIEP LKELVTVDSP ALYSSTTYDR YRQFIRTQGP RSKCHIDELK SPR

Arabidopsis Description

JRG21JRG21 [Source:UniProtKB/TrEMBL;Acc:A0A178V764]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.