Factsheet for PGSC0003DMT400013924

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013913	Potato	cytoskeleton, cytosol, peroxisome	88.98	40.08
PGSC0003DMT400013920	Potato	cytoskeleton, cytosol, peroxisome	88.14	39.39
Solyc07g054920.1.1	Tomato	cytoskeleton, cytosol, peroxisome, plastid	85.59	27.9
Solyc07g054940.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	88.98	25.61
PGSC0003DMT400049193	Potato	cytosol, mitochondrion, peroxisome	33.9	21.86
PGSC0003DMT400067586	Potato	cytosol, peroxisome, plastid	44.92	15.01
PGSC0003DMT400083733	Potato	cytosol	45.76	15.0
PGSC0003DMT400067044	Potato	cytosol	38.98	13.69
PGSC0003DMT400088016	Potato	cytosol	33.9	12.27
PGSC0003DMT400092726	Potato	cytosol, peroxisome, plastid	36.44	12.25
PGSC0003DMT400069218	Potato	cytosol	34.75	11.99
PGSC0003DMT400036565	Potato	cytosol	35.59	11.93
PGSC0003DMT400025150	Potato	cytosol	33.05	11.85
PGSC0003DMT400049192	Potato	cytosol	35.59	11.48
PGSC0003DMT400028828	Potato	cytosol	34.75	11.39
PGSC0003DMT400001570	Potato	cytosol	32.2	11.28
PGSC0003DMT400031149	Potato	cytosol	33.9	11.24
PGSC0003DMT400070302	Potato	cytosol	34.75	11.11
PGSC0003DMT400051681	Potato	cytosol	31.36	10.98
PGSC0003DMT400054579	Potato	cytosol	30.51	10.56
PGSC0003DMT400009900	Potato	cytosol	33.9	10.47
PGSC0003DMT400009175	Potato	cytosol	31.36	10.28
PGSC0003DMT400025139	Potato	cytosol	27.97	9.88
PGSC0003DMT400041798	Potato	cytosol	27.97	9.82
PGSC0003DMT400030676	Potato	mitochondrion	27.97	9.68
PGSC0003DMT400070444	Potato	cytosol, peroxisome, plastid	27.12	9.09
PGSC0003DMT400058554	Potato	cytosol	31.36	8.13
PGSC0003DMT400025148	Potato	cytosol	12.71	5.4
PGSC0003DMT400029386	Potato	cytosol, nucleus, peroxisome	15.25	4.8
PGSC0003DMT400083728	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400013924	EnsemblPlantsGene:PGSC0003DMG400005451	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF369	PFAM:PF03171	PGSC:PGSC0003DMG400005451	SUPFAM:SSF51197
UniParc:UPI000294FA18	UniProt:M1A3H1	MapMan:50.1.13	:	:	:

Description

Leucoanthocyanidin dioxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400005451]

Coordinates

chr7:+:48132317..48132891

Molecular Weight (calculated)

13196.9 Da

IEP (calculated)

9.827

GRAVY (calculated)

-0.442

Length

118 amino acids

Sequence
(BLAST)

001: MDNGIPGLQI KHNQTWYSVP HVPGTFIVNL GDYLEVLSNG KYKSVEHRAV VNAEAARISI AVGHGPKMDA IVQPASPLIK EKSESKYRPI VYKDYIRDQQ
101: STIKRGKSAL HEIMNNNI

Best Arabidopsis Sequence Match ( AT1G17010.1 )
(BLAST)

001: MEAKEETPWS SILVPSVQEM VKDKMITTVP PRYVRYDQDK TEVVVHDSGL ISEIPIIDMN RLCSSTAVDS EVEKLDFACK EYGFFQLVNH GIDPSFLDKI
101: KSEIQDFFNL PMEEKKKLWQ TPAVMEGFGQ AFVVSEDQKL DWADLFFLIM QPVQLRKRHL FPKLPLPFRD TLDMYSTRVK SIAKILLAKM AKALQIKPEE
201: VEEIFGDDMM QSMRMNYYPP CPQPNLVTGL IPHSDAVGLT ILLQVNEVDG LQIKKNGKWF FVKPLQNAFI VNVGDVLEII TNGTYRSIEH RAMVNLEKER
301: LSIATFHNTG MDKEIGPARS LVQRQEAAKF RSLKTKDYLN GLFSRELKGK AYLDAMRIEG K

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I629]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.