Factsheet for PGSC0003DMT400030676

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043420.2.1	Tomato	cytosol	93.55	93.27
VIT_07s0005g03150.t01	Wine grape	cytosol, peroxisome, plastid	43.7	43.7
KRH18340	Soybean	cytosol	42.82	43.32
KRG93692	Soybean	cytosol, nucleus, peroxisome	42.82	43.32
KRH32174	Soybean	cytosol	42.82	42.82
PGSC0003DMT400051681	Potato	cytosol	41.64	42.14
PGSC0003DMT400025150	Potato	cytosol	40.18	41.64
PGSC0003DMT400070444	Potato	cytosol, peroxisome, plastid	42.82	41.48
PGSC0003DMT400041798	Potato	cytosol	40.76	41.37
PGSC0003DMT400025139	Potato	cytosol	40.47	41.32
PGSC0003DMT400054579	Potato	cytosol	41.06	41.06
KRH01377	Soybean	cytosol, plastid	40.18	40.53
TraesCS7A01G037700.1	Wheat	cytosol	31.96	39.49
PGSC0003DMT400025148	Potato	cytosol	31.96	39.21
TraesCS7D01G160100.2	Wheat	plastid	38.12	39.04
TraesCS6D01G038900.1	Wheat	cytosol	36.36	38.63
TraesCS7B01G063700.1	Wheat	plastid	37.54	38.32
TraesCS1B01G052600.1	Wheat	cytosol	38.71	38.15
Os07t0169600-01	Rice	plastid	37.83	37.94
TraesCS7A01G159200.1	Wheat	plastid	36.95	37.84
TraesCS3B01G479500.1	Wheat	cytosol	38.12	37.36
TraesCS3A01G445000.1	Wheat	cytosol	38.12	37.14
EER95911	Sorghum	cytosol	36.36	37.01
TraesCS3B01G486500.1	Wheat	cytosol	37.83	36.96
TraesCS3D01G437500.2	Wheat	cytosol	37.54	36.78
KXG23555	Sorghum	cytosol	36.07	36.5
EES16044	Sorghum	cytosol	36.07	36.5
TraesCS6D01G270700.1	Wheat	cytosol, peroxisome, plastid	36.36	36.47
EES16047	Sorghum	cytosol	36.36	36.36
HORVU4Hr1G081500.1	Barley	cytosol, peroxisome	22.87	35.94
TraesCS6A01G288300.1	Wheat	plastid	35.78	35.88
PGSC0003DMT400069218	Potato	cytosol	35.78	35.67
PGSC0003DMT400001570	Potato	cytosol	35.19	35.61
TraesCS6D01G270600.1	Wheat	plastid	35.48	35.59
Zm00001d020163_P001	Maize	cytosol	27.86	35.58
HORVU7Hr1G033360.11	Barley	cytosol	37.54	35.36
TraesCS6B01G318000.1	Wheat	plastid	35.19	35.29
TraesCS6B01G046800.1	Wheat	plastid	35.78	35.26
TraesCS3B01G444500.1	Wheat	cytosol	35.19	34.99
TraesCS6B01G318100.1	Wheat	plastid	35.19	34.99
TraesCS6A01G033300.1	Wheat	plastid	35.48	34.97
TraesCS6D01G038500.1	Wheat	plastid	35.48	34.97
TraesCS6B01G317900.1	Wheat	cytosol	27.57	34.81
HORVU4Hr1G081480.3	Barley	plasma membrane	34.9	34.8
KXG23558	Sorghum	cytosol	34.6	34.5
TraesCS6B01G047100.1	Wheat	extracellular, vacuole	35.19	34.48
TraesCS6D01G270500.1	Wheat	plastid	34.6	34.4
Zm00001d035308_P001	Maize	extracellular	34.6	34.4
TraesCS3D01G405500.1	Wheat	cytosol	35.19	34.38
TraesCS6B01G044600.1	Wheat	cytosol	34.9	34.2
HORVU6Hr1G010980.1	Barley	cytosol	34.6	34.1
Zm00001d051896_P001	Maize	cytosol	34.9	34.0
HORVU4Hr1G081550.2	Barley	peroxisome, plastid	28.15	33.8
KRH45093	Soybean	cytosol, mitochondrion, nucleus, peroxisome	32.26	33.64
TraesCS6B01G048100.1	Wheat	plastid	32.84	33.63
TraesCS6D01G035200.1	Wheat	cytosol	34.31	33.62
TraesCS1A01G008400.1	Wheat	mitochondrion	31.96	33.44
HORVU7Hr1G122350.2	Barley	cytosol, peroxisome, plastid	33.14	33.43
TraesCS6A01G288400.1	Wheat	cytosol	34.9	33.33
EES06032	Sorghum	cytosol	34.31	33.33
HORVU4Hr1G081490.1	Barley	cytosol, peroxisome	34.9	33.24
TraesCS6A01G055700.1	Wheat	cytosol	33.72	33.24
Zm00001d041726_P001	Maize	plastid	33.72	33.24
TraesCS3D01G411700.1	Wheat	cytosol	29.33	33.11
TraesCS7A01G026100.1	Wheat	cytosol	30.21	32.91
HORVU4Hr1G089480.1	Barley	cytosol	33.72	32.67
PGSC0003DMT400049193	Potato	cytosol, mitochondrion, peroxisome	17.3	32.24
TraesCS6A01G031500.1	Wheat	cytosol	23.75	31.89
PGSC0003DMT400036565	Potato	cytosol	32.55	31.53
PGSC0003DMT400013920	Potato	cytoskeleton, cytosol, peroxisome	24.05	31.06
PGSC0003DMT400013913	Potato	cytoskeleton, cytosol, peroxisome	23.75	30.92
TraesCS6A01G030500.1	Wheat	plastid	26.39	30.41
TraesCS6A01G034100.1	Wheat	cytosol, peroxisome, plastid	27.57	30.32
PGSC0003DMT400070302	Potato	cytosol	32.55	30.08
HORVU1Hr1G071670.2	Barley	cytosol	35.78	29.54
PGSC0003DMT400049192	Potato	cytosol	31.67	29.51
PGSC0003DMT400031149	Potato	cytosol	30.79	29.49
PGSC0003DMT400067044	Potato	cytosol	29.03	29.46
PGSC0003DMT400009175	Potato	cytosol	31.09	29.44
PGSC0003DMT400067586	Potato	cytosol, peroxisome, plastid	29.91	28.9
PGSC0003DMT400009900	Potato	cytosol	32.26	28.8
PGSC0003DMT400092726	Potato	cytosol, peroxisome, plastid	29.33	28.49
PGSC0003DMT400013924	Potato	cytosol	9.68	27.97
PGSC0003DMT400083733	Potato	cytosol	29.03	27.5
PGSC0003DMT400028828	Potato	cytosol	28.74	27.22
PGSC0003DMT400088016	Potato	cytosol	24.63	25.77
PGSC0003DMT400083728	Potato	cytosol	12.32	25.15
TraesCS6D01G000600.1	Wheat	mitochondrion	17.6	23.53
PGSC0003DMT400029386	Potato	cytosol, nucleus, peroxisome	24.63	22.4
PGSC0003DMT400058554	Potato	cytosol	27.57	20.66

Protein Annotations

EntrezGene:102602308	Gene3D:2.60.120.330	MapMan:50.1.13	EMBL:AB061264	ProteinID:BAC23050	ProteinID:BAC23050.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
UniProt:M1AUM2	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400011751	PGSC:PGSC0003DMG400011751
EnsemblPlants:PGSC0003DMT400030676	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF220	SUPFAM:SSF51197	UniParc:UPI000296AB65
RefSeq:XP_006357880.1	SEG:seg	:	:	:	:

Description

2-oxoglutarate-dependent dioxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400011751]

Coordinates

chr7:+:41845573..41847191

Molecular Weight (calculated)

37883.0 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.262

Length

341 amino acids

Sequence
(BLAST)

001: MADLLSNWSS TLEAVPPSHC IPVHERPSDP VEIVDNIPVI DLGKANGEER SVVVKELLKA FEEYGFFQII NHGVPVDLMD EAMKVYKEFF SLPAAEKAEY
101: AKDAANDTNR GAATLYSSSA KHYDSEEHRY WRDVLEHSCN LDGKDKKTWP SNPPRYREVI GAYGDELRRV SKVILGLLAE GLGLEAGFFD TELGQRMLVN
201: HYPACPDPSL TLGVGGHCDP NLITIIQQEV YGLQILKDDK WIGVQPIRNA FVVNSGLPIT VVSNGKLTSV AHRVVTNTTH SRTSIGTFIC PHDIVEPAKA
301: LVGPENPPQF KSFNWGIDFM PHYLSKKSVY HASLEPFKID A

Best Arabidopsis Sequence Match ( AT2G44800.1 )
(BLAST)

001: MEETKMSLLD DSFTSAMTLT NSGVPQVPDR YVLPPSQRPA LGSSLGTSET TLPVIDLSLL HQPFLRSLAI HEISMACKEF GFFQVINHGI PSSVVNDALD
101: AATQFFDLPV EEKMLLVSAN VHEPVRYGTS LNHSTDRVHY WRDFIKHYSH PLSKWIDMWP SNPPCYKDKV GKYAEATHLL HKQLIEAISE SLGLEKNYLQ
201: EEIEEGSQVM AVNCYPACPE PEMALGMPPH SDFSSLTILL QSSKGLQIMD CNKNWVCVPY IEGALIVQLG DQVEVMSNGI YKSVIHRVTV NKEVKRLSFA
301: SLHSLPLHKK ISPAPKLVNP NNAPAYGEFS FNDFLNYISS NDFIQERFID TIKKSSS

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IV21]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.