Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014500.1-P | Field mustard | cytosol | 86.27 | 86.27 |
| CDY56988 | Canola | peroxisome | 85.99 | 85.99 |
| CDY42687 | Canola | peroxisome | 83.19 | 82.96 |
| AT2G44800.1 | Thale cress | cytosol, nucleus, peroxisome, plastid | 80.11 | 80.11 |
| PGSC0003DMT400067044 | Potato | cytosol | 55.46 | 58.93 |
| KRH40180 | Soybean | plastid | 57.98 | 58.81 |
| PGSC0003DMT400092726 | Potato | cytosol, peroxisome, plastid | 55.18 | 56.13 |
| Solyc01g090140.1.1 | Tomato | plastid | 33.89 | 54.02 |
| PGSC0003DMT400088016 | Potato | cytosol | 46.22 | 50.61 |
| AT5G07480.1 | Thale cress | cytosol | 48.74 | 48.88 |
| AT2G36690.1 | Thale cress | cytosol, nucleus, peroxisome | 42.58 | 41.53 |
| AT5G24530.1 | Thale cress | mitochondrion | 35.85 | 37.54 |
| AT4G10490.1 | Thale cress | cytosol | 33.89 | 34.77 |
| AT4G10500.1 | Thale cress | plastid | 33.61 | 34.38 |
| AT3G55970.1 | Thale cress | cytosol | 33.05 | 32.51 |
| AT2G38240.1 | Thale cress | plastid | 31.93 | 32.29 |
| AT5G05600.1 | Thale cress | cytosol | 33.33 | 32.08 |
| AT5G08640.1 | Thale cress | cytosol | 29.97 | 31.85 |
| AT5G63595.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 23.53 | 30.11 |
| AT5G63590.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 25.77 | 29.87 |
| AT3G11180.2 | Thale cress | cytosol | 33.61 | 29.78 |
| AT5G63580.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 20.73 | 29.6 |
| AT5G43935.1 | Thale cress | cytosol | 23.53 | 28.67 |
| AT5G63600.2 | Thale cress | cytosol | 25.77 | 28.22 |
| AT4G16330.2 | Thale cress | plastid | 28.29 | 27.75 |
| AT3G51240.1 | Thale cress | cytosol | 26.89 | 26.82 |
| AT4G22880.2 | Thale cress | cytosol | 26.61 | 26.69 |
Protein Annotations
| Gene3D:2.60.120.330 | MapMan:50.1.13 | EntrezGene:825200 | UniProt:A0A178VA78 | ProteinID:AEE80039.1 | ArrayExpress:AT3G60290 |
| EnsemblPlantsGene:AT3G60290 | RefSeq:AT3G60290 | TAIR:AT3G60290 | RefSeq:AT3G60290-TAIR-G | EnsemblPlants:AT3G60290.1 | TAIR:AT3G60290.1 |
| InterPro:DIOX_N | UniProt:F4JAP7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0016491 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0080167 |
| InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | RefSeq:NP_191588.2 | ProteinID:OAP02836.1 | InterPro:Oxoglu/Fe-dep_dioxygenase |
| PFAM:PF03171 | PFAM:PF14226 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF224 | SUPFAM:SSF51197 | UniParc:UPI00005DC227 | : |
Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JAP7]
Coordinates
chr3:+:22282423..22284706
Molecular Weight (calculated)
40443.2 Da
IEP (calculated)
6.107
GRAVY (calculated)
-0.310
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETNKSVVN DYFTSAMELT ESGDPHVPTR YILPPSQRPM LGPSIGTSTI NLPVIDLSFL HDPLLRLCVI HEIELACKGF GFFQVINHGI SSAVVKDAQD
101: SATRFFDLPA DEKMHLVSDN FQEPVRYGTS INHSTDRVHY WRDFIKHYSH PLSNWINLWP SNPPCYKEKV GKYAEATHVL HKQLIEAISE SLGLEKNYLQ
201: EEIEEGSQVM AVNCYPACPE PEIALGMPPH SDYGSLTILL QSSEGLQIKD CNNNWVCVPY IEGALIVQLG DQVEVMSNGI YKSVVHRVTV NKDYKRLSFA
301: SLHSLPMHKK ISPATQLVNE NKPAAYGEFS FNDFLDYISR NDITQKRFID TLRKKNL
101: SATRFFDLPA DEKMHLVSDN FQEPVRYGTS INHSTDRVHY WRDFIKHYSH PLSNWINLWP SNPPCYKEKV GKYAEATHVL HKQLIEAISE SLGLEKNYLQ
201: EEIEEGSQVM AVNCYPACPE PEIALGMPPH SDYGSLTILL QSSEGLQIKD CNNNWVCVPY IEGALIVQLG DQVEVMSNGI YKSVVHRVTV NKDYKRLSFA
301: SLHSLPMHKK ISPATQLVNE NKPAAYGEFS FNDFLDYISR NDITQKRFID TLRKKNL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.