Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019350.1-P | Field mustard | cytosol | 91.85 | 91.6 |
| CDX94133 | Canola | cytosol | 91.57 | 91.06 |
| CDY10816 | Canola | cytosol | 91.29 | 90.78 |
| Bra013652.1-P | Field mustard | cytosol | 91.29 | 90.78 |
| CDY41286 | Canola | cytosol | 91.01 | 90.5 |
| CDX98776 | Canola | cytosol | 91.85 | 83.21 |
| VIT_02s0025g04720.t01 | Wine grape | cytosol, peroxisome, plastid | 78.65 | 78.87 |
| KRH77456 | Soybean | cytosol | 77.81 | 78.69 |
| KRH27988 | Soybean | cytosol | 76.12 | 76.99 |
| GSMUA_Achr5P04080_001 | Banana | cytosol, peroxisome, plastid | 66.29 | 65.56 |
| Solyc08g080040.2.1 | Tomato | cytosol | 75.28 | 64.11 |
| PGSC0003DMT400058554 | Potato | cytosol | 74.44 | 58.24 |
| Zm00001d048800_P001 | Maize | cytosol | 27.25 | 49.49 |
| Zm00001d038073_P001 | Maize | cytosol | 30.06 | 49.31 |
| Zm00001d014914_P001 | Maize | cytosol | 52.53 | 47.34 |
| EES04312 | Sorghum | cytosol | 52.81 | 47.12 |
| Os01t0372500-00 | Rice | cytosol | 48.6 | 46.13 |
| Os06t0626700-00 | Rice | cytosol | 48.31 | 46.11 |
| TraesCS2B01G613000.1 | Wheat | cytosol, extracellular, peroxisome | 44.1 | 43.61 |
| HORVU5Hr1G094280.1 | Barley | cytosol, peroxisome | 46.91 | 43.26 |
| AT5G08640.1 | Thale cress | cytosol | 39.33 | 41.67 |
| TraesCS6A01G041800.1 | Wheat | cytosol | 44.94 | 40.71 |
| AT5G63590.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 33.71 | 38.96 |
| TraesCS6A01G001500.1 | Wheat | cytosol | 46.07 | 37.44 |
| TraesCS6B01G006200.1 | Wheat | cytosol | 46.07 | 37.27 |
| TraesCS6D01G004300.1 | Wheat | cytosol | 45.51 | 36.99 |
| AT5G63580.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 25.84 | 36.8 |
| AT5G63595.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 28.37 | 36.2 |
| AT5G43935.1 | Thale cress | cytosol | 28.09 | 34.13 |
| AT2G38240.1 | Thale cress | plastid | 32.87 | 33.14 |
| AT5G63600.2 | Thale cress | cytosol | 30.34 | 33.13 |
| AT5G05600.1 | Thale cress | cytosol | 33.99 | 32.61 |
| AT3G55970.1 | Thale cress | cytosol | 32.3 | 31.68 |
| AT5G24530.1 | Thale cress | mitochondrion | 30.06 | 31.38 |
| AT4G10490.1 | Thale cress | cytosol | 30.34 | 31.03 |
| AT3G11180.2 | Thale cress | cytosol | 33.71 | 29.78 |
| AT4G16330.2 | Thale cress | plastid | 30.06 | 29.4 |
| AT4G10500.1 | Thale cress | plastid | 28.65 | 29.23 |
| AT2G36690.1 | Thale cress | cytosol, nucleus, peroxisome | 29.21 | 28.42 |
| AT2G44800.1 | Thale cress | cytosol, nucleus, peroxisome, plastid | 28.09 | 28.01 |
| AT3G51240.1 | Thale cress | cytosol | 28.09 | 27.93 |
| AT3G60290.1 | Thale cress | cytosol, nucleus, peroxisome | 26.69 | 26.61 |
| AT5G07480.1 | Thale cress | cytosol | 26.4 | 26.4 |
Protein Annotations
| PDB:1GP4 | PDB:1GP5 | PDB:1GP6 | Gene3D:2.60.120.330 | PDB:2BRT | EntrezGene:828387 |
| MapMan:9.2.2.9.2 | ProteinID:AEE84672.1 | ProteinID:AEE84673.1 | EMBL:AK226417 | EMBL:AK317414 | ProteinID:ANM67022.1 |
| ArrayExpress:AT4G22880 | EnsemblPlantsGene:AT4G22880 | RefSeq:AT4G22880 | TAIR:AT4G22880 | RefSeq:AT4G22880-TAIR-G | EnsemblPlants:AT4G22880.2 |
| TAIR:AT4G22880.2 | EMBL:AY088203 | Unigene:At.2369 | ProteinID:CAA19803.1 | ProteinID:CAB79243.1 | InterPro:DIOX_N |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006950 | GO:GO:0007033 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009718 | GO:GO:0009719 | GO:GO:0009753 |
| GO:GO:0009813 | GO:GO:0009987 | GO:GO:0010023 | GO:GO:0016043 | GO:GO:0016491 | GO:GO:0019748 |
| GO:GO:0030246 | GO:GO:0031418 | GO:GO:0046872 | GO:GO:0050589 | GO:GO:0051213 | GO:GO:0055114 |
| InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | Symbol:LDOX | RefSeq:NP_001031700.1 | RefSeq:NP_001320035.1 |
| RefSeq:NP_194019.1 | InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 | PO:PO:0000293 | PO:PO:0001170 |
| PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF190 | UniProt:Q0WWD6 | UniProt:Q96323 | SUPFAM:SSF51197 |
| EMBL:U70478 | UniParc:UPI00000489BD | SEG:seg | : | : | : |
Description
LDOXAT4G22880 protein [Source:UniProtKB/TrEMBL;Acc:Q0WWD6]
Coordinates
chr4:-:12004726..12006209
Molecular Weight (calculated)
40398.6 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.394
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAVERVESL AKSGIISIPK EYIRPKEELE SINDVFLEEK KEDGPQVPTI DLKNIESDDE KIRENCIEEL KKASLDWGVM HLINHGIPAD LMERVKKAGE
101: EFFSLSVEEK EKYANDQATG KIQGYGSKLA NNASGQLEWE DYFFHLAYPE EKRDLSIWPK TPSDYIEATS EYAKCLRLLA TKVFKALSVG LGLEPDRLEK
201: EVGGLEELLL QMKINYYPKC PQPELALGVE AHTDVSALTF ILHNMVPGLQ LFYEGKWVTA KCVPDSIVMH IGDTLEILSN GKYKSILHRG LVNKEKVRIS
301: WAVFCEPPKD KIVLKPLPEM VSVESPAKFP PRTFAQHIEH KLFGKEQEEL VSEKND
101: EFFSLSVEEK EKYANDQATG KIQGYGSKLA NNASGQLEWE DYFFHLAYPE EKRDLSIWPK TPSDYIEATS EYAKCLRLLA TKVFKALSVG LGLEPDRLEK
201: EVGGLEELLL QMKINYYPKC PQPELALGVE AHTDVSALTF ILHNMVPGLQ LFYEGKWVTA KCVPDSIVMH IGDTLEILSN GKYKSILHRG LVNKEKVRIS
301: WAVFCEPPKD KIVLKPLPEM VSVESPAKFP PRTFAQHIEH KLFGKEQEEL VSEKND
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.