Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0132000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30825.1 | Os03t0132000-01 | AT1G20480.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G229900.1 | Wheat | plastid | 74.74 | 77.48 |
| TraesCS5B01G220900.1 | Wheat | mitochondrion, plastid | 74.43 | 76.99 |
| HORVU5Hr1G064130.1 | Barley | plastid | 74.12 | 76.58 |
| TraesCS5A01G222100.1 | Wheat | mitochondrion, plastid | 73.39 | 75.91 |
| EES13584 | Sorghum | mitochondrion | 71.21 | 72.72 |
| Zm00001d024409_P001 | Maize | plastid | 71.21 | 71.28 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 45.95 | 65.1 |
| KRH63118 | Soybean | plastid | 45.43 | 51.17 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 47.82 | 51.11 |
| CDX68697 | Canola | cytosol | 45.11 | 49.37 |
| CDY28218 | Canola | cytosol | 44.8 | 49.03 |
| Bra011225.1-P | Field mustard | cytosol | 44.39 | 48.58 |
| AT4G30825.1 | Thale cress | cytosol, plastid | 44.91 | 47.79 |
| PGSC0003DMT400029152 | Potato | cytosol | 45.22 | 46.42 |
| Solyc07g005950.2.1 | Tomato | cytosol | 45.53 | 45.86 |
| Os06t0111300-00 | Rice | plastid | 9.98 | 16.05 |
| Os06t0199100-01 | Rice | cytosol | 17.05 | 12.78 |
| Os06t0111400-01 | Rice | plasma membrane | 8.0 | 8.88 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:4347096 | ProteinID:BAD33419.1 | ProteinID:BAD33652.1 | ProteinID:BAF25124.1 |
| ProteinID:BAT08141.1 | ProteinID:BAT08142.1 | ProteinID:EAZ44778.1 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005675 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006357 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR002885 | InterPro:IPR011990 | EnsemblPlantsGene:Os09g0423300 | EnsemblPlants:Os09t0423300-01 | PFAM:PF01535 |
| PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR12683 | PANTHER:PTHR12683:SF10 | InterPro:Pentatricopeptide_repeat | UniProt:Q69P44 |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00003FF395 | RefSeq:XP_015651316.1 | SEG:seg |
Description
Pentatricopeptide repeat domain containing protein. (Os09t0423300-01);Similar to pentatricopeptide (PPR) repeat-containing protein. (Os09t0423300-02);Hypothetical conserved gene. (Os09t0423300-03)
Coordinates
chr9:+:15328754..15332301
Molecular Weight (calculated)
106908.0 Da
IEP (calculated)
7.482
GRAVY (calculated)
-0.131
Length
962 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALRICTPG GGAPEARRGS LAAAGSAVQH GPDLIGFSSW VLPISAGYAV DRRHAAAGGV AACHGLSCAD SGRRKNHPRA SLVNGVVSSL EDSSGGEPAL
101: CVSDSPEDAS SSGKVLSDLR RDMVDGISGI PRISAGKKKG MKFRRRGQGG NRLTRRSAPR RASGKSGQDQ RILLSEDDIA AILSSVTHES SIEECNSVLI
201: CLEKHSDKTA LGFFEWMKAN GKLKGNAEAY HLALQAIAWK EDWEAAGQLL HEMVADSGCA LDAQAFNGLI YVCAKRRLVD WGTKWLHMML ERDVQPNVST
301: VGMLMGLYQR IGNLPEAEFT FAKMRKCGIK CVNAYSAMVT LYTRLGHFAK SEEVITLMNN DEVVPNMENW LVRLNAYCQQ GKMEEAELVL KSLVDEGIAL
401: NVVAYNTVIT GYGKVSDMQK AMEVFDRLKS AGLAPDETTY RSMIEGFGRA DKYKQAILYY RKLRNSGFKP NASNFYTMIN LLARHDDSEG ATEILEDMRA
501: AGCQCSSIVT VLVRAYGSVG RMHKVLQILK ACFYKKILFD ATSCSILVTG FVQNSLVEEA MRVLREKKWK DSDFEDNLYH ILICSCKEAG CCDDAVRIYN
601: QMPKSATHPN LRIYCSMIDV FSIMERFTDA EALYLELKAS SCVLDMIAYS VIVRMYTKAG RPEDACLVLE DMEKQKEIVP DKYLFLDMLR TYQKCGLLEK
701: LSDTYYWILK SQVELDEAMY NCIINCCGRA IPVDELSRIF DEMIQQGHLA NTVTLNVLLD IYGKAGLFNK AEKVFLMARK QGMADIISYN TIIAAHAKNG
801: DFRSMIYFVQ RMQEAGFPVS LEAYNCMLDA YGKAGQLEEF AAVLQKMERA GCEFDHYTYN IMINIYGRKG WIEGVANVLA ELKSRGGEPD LYSYNTLIKA
901: YGIAGMPEDA VKLMQEMRIK GIAADRVTYT NLIAALQRNE NFLEAVKWSL WMKQTGVAAT RT
101: CVSDSPEDAS SSGKVLSDLR RDMVDGISGI PRISAGKKKG MKFRRRGQGG NRLTRRSAPR RASGKSGQDQ RILLSEDDIA AILSSVTHES SIEECNSVLI
201: CLEKHSDKTA LGFFEWMKAN GKLKGNAEAY HLALQAIAWK EDWEAAGQLL HEMVADSGCA LDAQAFNGLI YVCAKRRLVD WGTKWLHMML ERDVQPNVST
301: VGMLMGLYQR IGNLPEAEFT FAKMRKCGIK CVNAYSAMVT LYTRLGHFAK SEEVITLMNN DEVVPNMENW LVRLNAYCQQ GKMEEAELVL KSLVDEGIAL
401: NVVAYNTVIT GYGKVSDMQK AMEVFDRLKS AGLAPDETTY RSMIEGFGRA DKYKQAILYY RKLRNSGFKP NASNFYTMIN LLARHDDSEG ATEILEDMRA
501: AGCQCSSIVT VLVRAYGSVG RMHKVLQILK ACFYKKILFD ATSCSILVTG FVQNSLVEEA MRVLREKKWK DSDFEDNLYH ILICSCKEAG CCDDAVRIYN
601: QMPKSATHPN LRIYCSMIDV FSIMERFTDA EALYLELKAS SCVLDMIAYS VIVRMYTKAG RPEDACLVLE DMEKQKEIVP DKYLFLDMLR TYQKCGLLEK
701: LSDTYYWILK SQVELDEAMY NCIINCCGRA IPVDELSRIF DEMIQQGHLA NTVTLNVLLD IYGKAGLFNK AEKVFLMARK QGMADIISYN TIIAAHAKNG
801: DFRSMIYFVQ RMQEAGFPVS LEAYNCMLDA YGKAGQLEEF AAVLQKMERA GCEFDHYTYN IMINIYGRKG WIEGVANVLA ELKSRGGEPD LYSYNTLIKA
901: YGIAGMPEDA VKLMQEMRIK GIAADRVTYT NLIAALQRNE NFLEAVKWSL WMKQTGVAAT RT
001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.