Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G033940.1 | Barley | cytosol | 78.96 | 80.52 |
| TraesCS7D01G162800.1 | Wheat | plastid | 80.51 | 71.34 |
| TraesCS7B01G066600.1 | Wheat | plastid | 80.2 | 71.21 |
| TraesCS7A01G161500.1 | Wheat | plastid | 80.05 | 70.97 |
| KXG19540 | Sorghum | plastid | 77.01 | 68.33 |
| Zm00001d045014_P003 | Maize | plastid | 76.38 | 67.59 |
| GSMUA_Achr10P... | Banana | plastid | 61.73 | 57.39 |
| Bra022281.1-P | Field mustard | cytosol | 52.14 | 50.99 |
| VIT_16s0039g02570.t01 | Wine grape | plastid | 57.76 | 50.0 |
| AT3G18110.1 | Thale cress | plastid | 53.94 | 48.06 |
| KRH27784 | Soybean | plastid | 55.26 | 47.68 |
| Solyc03g096830.2.1 | Tomato | plastid | 53.55 | 46.58 |
| CDX95788 | Canola | cytosol | 12.24 | 43.85 |
| CDX95789 | Canola | cytosol | 22.45 | 38.45 |
| CDX92197 | Canola | cytosol | 3.27 | 27.45 |
| Os09t0423300-01 | Rice | mitochondrion | 12.78 | 17.05 |
| Os06t0111300-00 | Rice | plastid | 6.63 | 14.21 |
| Os06t0111400-01 | Rice | plasma membrane | 6.7 | 9.92 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ProteinID:BAD36643.1 | ProteinID:BAF18979.1 | ProteinID:BAS96640.1 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 |
| InterPro:IPR011990 | EnsemblPlantsGene:Os06g0199100 | EnsemblPlants:Os06t0199100-01 | PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 |
| PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF556 | InterPro:Pentatricopeptide_repeat | UniProt:Q69K58 |
| SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000403B0A | SEG:seg | : |
Description
Helix-turn-helix, AraC type, subdomain 2 domain containing protein. (Os06t0199100-01)
Coordinates
chr6:-:5027686..5035358
Molecular Weight (calculated)
144670.0 Da
IEP (calculated)
6.266
GRAVY (calculated)
-0.151
Length
1283 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLMAVASQP FLSTSTSTSS RHIRRATVAT AAAAAPDDFD YPLADPSVRW PHLRFPHLPT VQVFNAMMGV YARSGRFDDA RQLLDAMRDQ DIEPDLVSFN
0101: TLINARAKSG CLAAGVALEL LHEVRQAGLR PDAITYNTLI SACSQGSNLD DAVAVFEEMI ASECRPDLWT YNAMVSVHGR CGKAQEAELM FKELVEKGFQ
0201: PDAVTYNSLL YAFAKEGDVE RVERVCEELV KAGFRKDGIT YNTMIHMYGK MGRLDLALGL YDEMRAIGCT PDAVTYTVLV DSLGKMDRIS EAGKVLEEMA
0301: DAGLKPTLVT FSALICAYAK SGRQDDAERT FDRMVESGVK PDRLAYLVML DVFARSDETR KLMVLYRAMI KDGYKPDDGL YQVLLAALAK GNEHDEIEGV
0401: IQDMEAVFEM NPLVISSILI KAECISQGAS LLKRACLQGY EPDGKSLLSI LDAYEKMGKH EKGLSLLEWI RQHVPNSHNL ISECSIMLLC KNGKIVDAIQ
0501: EYSRKQMLKR GSFGQDCDLY EYLITYLEEA ELFPEACQVF CDMQFLGIVP SQKIYQSIIY TCCRLGFPET AYQLMDDAAR SDISLNILSC RVAMIEAYGK
0601: LKLWQQAENF VKGLKQESGV DRRIWNALIH AYAESGLYEH ARAIFDIMIK KGPLPTVESV NGMMRALIVD GRLDELYVVV QELQDLDIKI SKSTVLLMLE
0701: AFAKAGDVFE VMKIYNGMKA AGYLPNMHLY RIMISLLCHN KRFRDVELMV AEMEGAGFKP DLVVLNTLLL MYTGTGNFDR TIEVYHSILE AGLEPDEDTY
0801: NTLIVMYSRN FRPEEGFTLL YEMGKRGLTP KLESYKILLA ASGKAKLWEQ ADLLFEEMRT KGYRLNRSIY HMMMKIYRNA RNHSKAEHLL SAMKEDGIEP
0901: TIATMHILMT SYGTSGHPDE AEKVLNSLKS SNLEISTLPY STVLDAYLRN RDYSLGITKL LEMKRDGVEP DHQVWTSFIR AASLCEQTDD AILLLKSLQD
1001: CGFDLPIRLL TERTSSLFTE VDSFLEKLGT LEDSASLNFV NALEDLLWAF ERRATASWIF QLAVKRSIYH HNIFRVEEKD WGADLRKLSA GAALVALTLW
1101: LDQMQDASLQ GAPESPKSIV LVTGEGEYNM VSLRKTIRAY LLEMGSPFLP CRSRSGRFVV KAYSLKMWLK DSPFCLDLEL KDAPALPKTN SMKLTEGYFM
1201: RAGLVPVFKD IHERLGEVWP KKFSRLALLS EESRDEVIKA DIKGRKEKLE KMKKQGLAIA KRSKRGPRRG KFVKQQSTQE VLK
0101: TLINARAKSG CLAAGVALEL LHEVRQAGLR PDAITYNTLI SACSQGSNLD DAVAVFEEMI ASECRPDLWT YNAMVSVHGR CGKAQEAELM FKELVEKGFQ
0201: PDAVTYNSLL YAFAKEGDVE RVERVCEELV KAGFRKDGIT YNTMIHMYGK MGRLDLALGL YDEMRAIGCT PDAVTYTVLV DSLGKMDRIS EAGKVLEEMA
0301: DAGLKPTLVT FSALICAYAK SGRQDDAERT FDRMVESGVK PDRLAYLVML DVFARSDETR KLMVLYRAMI KDGYKPDDGL YQVLLAALAK GNEHDEIEGV
0401: IQDMEAVFEM NPLVISSILI KAECISQGAS LLKRACLQGY EPDGKSLLSI LDAYEKMGKH EKGLSLLEWI RQHVPNSHNL ISECSIMLLC KNGKIVDAIQ
0501: EYSRKQMLKR GSFGQDCDLY EYLITYLEEA ELFPEACQVF CDMQFLGIVP SQKIYQSIIY TCCRLGFPET AYQLMDDAAR SDISLNILSC RVAMIEAYGK
0601: LKLWQQAENF VKGLKQESGV DRRIWNALIH AYAESGLYEH ARAIFDIMIK KGPLPTVESV NGMMRALIVD GRLDELYVVV QELQDLDIKI SKSTVLLMLE
0701: AFAKAGDVFE VMKIYNGMKA AGYLPNMHLY RIMISLLCHN KRFRDVELMV AEMEGAGFKP DLVVLNTLLL MYTGTGNFDR TIEVYHSILE AGLEPDEDTY
0801: NTLIVMYSRN FRPEEGFTLL YEMGKRGLTP KLESYKILLA ASGKAKLWEQ ADLLFEEMRT KGYRLNRSIY HMMMKIYRNA RNHSKAEHLL SAMKEDGIEP
0901: TIATMHILMT SYGTSGHPDE AEKVLNSLKS SNLEISTLPY STVLDAYLRN RDYSLGITKL LEMKRDGVEP DHQVWTSFIR AASLCEQTDD AILLLKSLQD
1001: CGFDLPIRLL TERTSSLFTE VDSFLEKLGT LEDSASLNFV NALEDLLWAF ERRATASWIF QLAVKRSIYH HNIFRVEEKD WGADLRKLSA GAALVALTLW
1101: LDQMQDASLQ GAPESPKSIV LVTGEGEYNM VSLRKTIRAY LLEMGSPFLP CRSRSGRFVV KAYSLKMWLK DSPFCLDLEL KDAPALPKTN SMKLTEGYFM
1201: RAGLVPVFKD IHERLGEVWP KKFSRLALLS EESRDEVIKA DIKGRKEKLE KMKKQGLAIA KRSKRGPRRG KFVKQQSTQE VLK
0001: MAVSAGALAF PALSVRATLN PEIKDEQANI SSTTSSSQKF TYSRASPAVR WPHLNLREIY DSTPSQTLSS PVSPIAGTPD SGDVVDSIAS REEQKTKDET
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
0101: AVATRRRRVK KMNKVALIKA KDWRERVKFL TDKILSLKSN QFVADILDAR LVQMTPTDYC FVVKSVGQES WQRALEVFEW LNLRHWHSPN ARMVAAILGV
0201: LGRWNQESLA VEIFTRAEPT VGDRVQVYNA MMGVYSRSGK FSKAQELVDA MRQRGCVPDL ISFNTLINAR LKSGGLTPNL AVELLDMVRN SGLRPDAITY
0301: NTLLSACSRD SNLDGAVKVF EDMEAHRCQP DLWTYNAMIS VYGRCGLAAE AERLFMELEL KGFFPDAVTY NSLLYAFARE RNTEKVKEVY QQMQKMGFGK
0401: DEMTYNTIIH MYGKQGQLDL ALQLYKDMKG LSGRNPDAIT YTVLIDSLGK ANRTVEAAAL MSEMLDVGIK PTLQTYSALI CGYAKAGKRE EAEDTFSCML
0501: RSGTKPDNLA YSVMLDVLLR GNETRKAWGL YRDMISDGHT PSYTLYELMI LGLMKENRSD DIQKTIRDME ELCGMNPLEI SSVLVKGECF DLAARQLKVA
0601: ITNGYELEND TLLSILGSYS SSGRHSEAFE LLEFLKEHAS GSKRLITEAL IVLHCKVNNL SAALDEYFAD PCVHGWCFGS STMYETLLHC CVANEHYAEA
0701: SQVFSDLRLS GCEASESVCK SMVVVYCKLG FPETAHQVVN QAETKGFHFA CSPMYTDIIE AYGKQKLWQK AESVVGNLRQ SGRTPDLKTW NSLMSAYAQC
0801: GCYERARAIF NTMMRDGPSP TVESINILLH ALCVDGRLEE LYVVVEELQD MGFKISKSSI LLMLDAFARA GNIFEVKKIY SSMKAAGYLP TIRLYRMMIE
0901: LLCKGKRVRD AEIMVSEMEE ANFKVELAIW NSMLKMYTAI EDYKKTVQVY QRIKETGLEP DETTYNTLII MYCRDRRPEE GYLLMQQMRN LGLDPKLDTY
1001: KSLISAFGKQ KCLEQAEQLF EELLSKGLKL DRSFYHTMMK ISRDSGSDSK AEKLLQMMKN AGIEPTLATM HLLMVSYSSS GNPQEAEKVL SNLKDTEVEL
1101: TTLPYSSVID AYLRSKDYNS GIERLLEMKK EGLEPDHRIW TCFVRAASFS KEKIEVMLLL KALEDIGFDL PIRLLAGRPE LLVSEVDGWF EKLKSIEDNA
1201: ALNFVNALLN LLWAFELRAT ASWVFQLGIK RGIFSLDVFR VADKDWGADF RRLSGGAALV ALTLWLDHMQ DASLEGYPES PKSVVLITGT AEYNGISLDK
1301: TLKACLWEMG SPFLPCKTRT GLLVAKAHSL RMWLKDSPFC FDLELKDSVS LPESNSMDLI DGCFIRRGLV PAFNHIKERL GGFVSPKKFS RLALLPDEMR
1401: ERVIKTDIEG HRQKLEKMKK KKMGNETNGI NTRRKFVRSK
Arabidopsis Description
EMB1270Pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.